Variant report

Variant	rs73600744
Chromosome Location	chr16:82052974-82052975
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs16956351	1.00[AMR][1000 genomes]
rs16956356	1.00[AMR][1000 genomes]
rs16956360	1.00[AMR][1000 genomes]
rs16956363	1.00[AMR][1000 genomes]
rs56242390	1.00[AMR][1000 genomes]
rs57981289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58349358	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58442388	1.00[AMR][1000 genomes]
rs59037033	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59166161	1.00[AMR][1000 genomes]
rs60135185	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61121331	1.00[AMR][1000 genomes]
rs7184886	1.00[AMR][1000 genomes]
rs7196477	1.00[AMR][1000 genomes]
rs73598786	1.00[AMR][1000 genomes]
rs73598792	1.00[AMR][1000 genomes]
rs73600703	1.00[AMR][1000 genomes]
rs73600704	1.00[AMR][1000 genomes]
rs73600707	1.00[AMR][1000 genomes]
rs73600711	1.00[AMR][1000 genomes]
rs73600737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73600745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73600748	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73600749	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73600765	1.00[AMR][1000 genomes]
rs73600770	1.00[AMR][1000 genomes]
rs73603043	1.00[AMR][1000 genomes]
rs73603046	1.00[AMR][1000 genomes]
rs73603049	1.00[AMR][1000 genomes]
rs73603061	1.00[AMR][1000 genomes]
rs8191127	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1058368	chr16:82029516-82152788	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82050600-82053000	Weak transcription	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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