Variant report

Variant	rs73600770
Chromosome Location	chr16:82078253-82078254
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:82076564..82079746-chr16:82084157..82087056,3	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs16956351	1.00[AMR][1000 genomes]
rs16956356	1.00[AMR][1000 genomes]
rs16956360	1.00[AMR][1000 genomes]
rs16956363	1.00[AMR][1000 genomes]
rs56242390	1.00[AMR][1000 genomes]
rs57981289	1.00[AMR][1000 genomes]
rs58349358	1.00[AMR][1000 genomes]
rs58442388	1.00[AMR][1000 genomes]
rs59037033	1.00[AMR][1000 genomes]
rs59166161	1.00[AMR][1000 genomes]
rs60135185	1.00[AMR][1000 genomes]
rs61121331	1.00[AMR][1000 genomes]
rs7184886	1.00[AMR][1000 genomes]
rs7196477	1.00[AMR][1000 genomes]
rs73598786	1.00[AMR][1000 genomes]
rs73598792	1.00[AMR][1000 genomes]
rs73600703	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73600704	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73600707	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73600711	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73600727	0.83[AFR][1000 genomes]
rs73600737	1.00[AMR][1000 genomes]
rs73600744	1.00[AMR][1000 genomes]
rs73600745	1.00[AMR][1000 genomes]
rs73600748	1.00[AMR][1000 genomes]
rs73600749	1.00[AMR][1000 genomes]
rs73600765	1.00[AMR][1000 genomes]
rs73603043	1.00[AMR][1000 genomes]
rs73603046	1.00[AMR][1000 genomes]
rs73603049	1.00[AMR][1000 genomes]
rs73603061	1.00[AMR][1000 genomes]
rs8191127	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1058368	chr16:82029516-82152788	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
4	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82070200-82083400	Weak transcription	Colonic Mucosa	Colon
2	chr16:82070800-82081200	Weak transcription	Pancreas	Pancrea
3	chr16:82074200-82078400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr16:82074200-82085600	Enhancers	HepG2	liver
5	chr16:82075200-82082400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr16:82075800-82078400	Enhancers	NHLF	lung
7	chr16:82076400-82078600	Enhancers	NH-A	brain
8	chr16:82076400-82079800	Enhancers	Fetal Lung	lung
9	chr16:82076600-82078400	Enhancers	HSMMtube	muscle
10	chr16:82076600-82078600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr16:82076600-82079000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr16:82076600-82079600	Enhancers	Fetal Stomach	stomach
13	chr16:82076600-82094800	Enhancers	Fetal Intestine Large	intestine
14	chr16:82077000-82079200	Weak transcription	Placenta	Placenta
15	chr16:82077000-82083800	Weak transcription	Lung	lung
16	chr16:82077200-82078600	Enhancers	Fetal Kidney	kidney
17	chr16:82077200-82079800	Enhancers	Fetal Intestine Small	intestine
18	chr16:82077400-82078400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr16:82077400-82078400	Enhancers	Muscle Satellite Cultured Cells	--
20	chr16:82077400-82078400	Enhancers	HMEC	breast
21	chr16:82077400-82078400	Enhancers	NHEK	skin
22	chr16:82077600-82078600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr16:82077600-82078600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr16:82077600-82078600	Enhancers	NHDF-Ad	bronchial
25	chr16:82077800-82078400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr16:82077800-82078400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr16:82077800-82078400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr16:82077800-82078400	Enhancers	Stomach Mucosa	stomach
29	chr16:82077800-82078400	Enhancers	HSMM	muscle
30	chr16:82077800-82078600	Enhancers	Gastric	stomach
31	chr16:82077800-82080000	Enhancers	Brain Germinal Matrix	brain
32	chr16:82078000-82078400	Enhancers	Esophagus	oesophagus
33	chr16:82078000-82078400	Enhancers	Small Intestine	intestine
34	chr16:82078000-82078600	Enhancers	Rectal Mucosa Donor 31	rectum
35	chr16:82078000-82080000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr16:82078200-82079400	Enhancers	Liver	Liver
37	chr16:82078200-82080400	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr16:82078200-82081000	Genic enhancers	Duodenum Mucosa	Duodenum

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