Variant report

Variant	rs73600711
Chromosome Location	chr16:82032631-82032632
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:82030963..82032834-chr16:82203698..82205625,2	MCF-7	breast:
2	chr16:81972632..81975511-chr16:82029375..82034440,5	MCF-7	breast:
3	chr16:82030016..82033170-chr16:82033184..82035673,3	K562	blood:
4	chr16:82020585..82022664-chr16:82031489..82033612,2	MCF-7	breast:
5	chr16:82030016..82033170-chr16:82033184..82036470,3	K562	blood:
6	chr16:82031112..82032708-chr16:82039797..82042760,2	MCF-7	breast:
7	chr16:82024895..82026648-chr16:82031387..82033365,2	K562	blood:
8	chr16:82031950..82034782-chr16:82038461..82041370,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000135698	Chromatin interaction
ENSG00000261029	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs16956351	1.00[AMR][1000 genomes]
rs16956356	1.00[AMR][1000 genomes]
rs16956360	1.00[AMR][1000 genomes]
rs16956363	1.00[AMR][1000 genomes]
rs56242390	1.00[AMR][1000 genomes]
rs57981289	1.00[AMR][1000 genomes]
rs58349358	1.00[AMR][1000 genomes]
rs58442388	1.00[AMR][1000 genomes]
rs59037033	1.00[AMR][1000 genomes]
rs59166161	1.00[AMR][1000 genomes]
rs60135185	1.00[AMR][1000 genomes]
rs61121331	1.00[AMR][1000 genomes]
rs7184886	1.00[AMR][1000 genomes]
rs7196477	1.00[AMR][1000 genomes]
rs73598786	1.00[AMR][1000 genomes]
rs73598792	1.00[AMR][1000 genomes]
rs73600703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73600704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73600707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73600727	1.00[AFR][1000 genomes]
rs73600737	1.00[AMR][1000 genomes]
rs73600744	1.00[AMR][1000 genomes]
rs73600745	1.00[AMR][1000 genomes]
rs73600748	1.00[AMR][1000 genomes]
rs73600749	1.00[AMR][1000 genomes]
rs73600765	1.00[AMR][1000 genomes]
rs73600770	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73603043	1.00[AMR][1000 genomes]
rs73603046	1.00[AMR][1000 genomes]
rs73603049	1.00[AMR][1000 genomes]
rs73603061	1.00[AMR][1000 genomes]
rs8191127	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1058368	chr16:82029516-82152788	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82023600-82036600	Weak transcription	Fetal Kidney	kidney
2	chr16:82024800-82032800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr16:82027400-82044200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr16:82027600-82033200	Weak transcription	Primary B cells from cord blood	blood
5	chr16:82027800-82041600	Strong transcription	Primary T cells from cord blood	blood
6	chr16:82029400-82041400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr16:82030000-82034000	Strong transcription	Thymus	Thymus
8	chr16:82030000-82034800	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr16:82030000-82035000	Weak transcription	GM12878-XiMat	blood
10	chr16:82030000-82044000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr16:82030200-82034200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr16:82030200-82034800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr16:82030200-82034800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr16:82030400-82033200	Weak transcription	Colonic Mucosa	Colon
15	chr16:82030600-82032800	Weak transcription	Esophagus	oesophagus
16	chr16:82030600-82037800	Weak transcription	Aorta	Aorta
17	chr16:82030600-82044200	Weak transcription	Small Intestine	intestine
18	chr16:82030800-82034800	Weak transcription	Fetal Muscle Trunk	muscle
19	chr16:82030800-82042400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr16:82031000-82033000	Strong transcription	Primary hematopoietic stem cells	blood
21	chr16:82031000-82044400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr16:82031200-82032800	Weak transcription	Lung	lung
23	chr16:82031200-82038600	Strong transcription	Duodenum Mucosa	Duodenum
24	chr16:82031400-82034000	Strong transcription	Primary B cells from peripheral blood	blood
25	chr16:82031400-82034000	Strong transcription	Fetal Thymus	thymus
26	chr16:82031400-82034600	Strong transcription	Liver	Liver
27	chr16:82031400-82035000	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr16:82031600-82034200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr16:82031600-82034200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr16:82031600-82034200	Strong transcription	Gastric	stomach
31	chr16:82031600-82034800	Strong transcription	Rectal Mucosa Donor 29	rectum
32	chr16:82031800-82032800	Weak transcription	Fetal Stomach	stomach
33	chr16:82031800-82032800	Weak transcription	Stomach Smooth Muscle	stomach
34	chr16:82031800-82032800	Weak transcription	NHEK	skin
35	chr16:82031800-82034000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr16:82031800-82034400	Weak transcription	Osteobl	bone
37	chr16:82031800-82034600	Strong transcription	Primary T helper cells PMA-I stimulated	--
38	chr16:82032000-82033000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr16:82032000-82034800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr16:82032000-82038000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr16:82032000-82038400	Strong transcription	Fetal Intestine Large	intestine
42	chr16:82032000-82043400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr16:82032000-82044400	Weak transcription	Colon Smooth Muscle	Colon
44	chr16:82032000-82044400	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr16:82032200-82033800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
46	chr16:82032200-82033800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr16:82032200-82034000	Strong transcription	Fetal Intestine Small	intestine
48	chr16:82032200-82034000	Strong transcription	Pancreas	Pancrea
49	chr16:82032200-82034000	Strong transcription	Rectal Mucosa Donor 31	rectum
50	chr16:82032200-82034400	Strong transcription	HMEC	breast

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