Variant report

Variant	rs73600704
Chromosome Location	chr16:82028324-82028325
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:82023035..82025651-chr16:82026724..82029302,2	MCF-7	breast:
2	chr16:81923752..81924641-chr16:82028156..82028916,2	MCF-7	breast:
3	chr16:82027010..82029205-chr16:82052580..82054866,2	MCF-7	breast:
4	chr16:82017852..82020203-chr16:82026768..82030109,3	K562	blood:
5	chr16:81974107..81974987-chr16:82028201..82029279,3	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs16956351	1.00[AMR][1000 genomes]
rs16956356	1.00[AMR][1000 genomes]
rs16956360	1.00[AMR][1000 genomes]
rs16956363	1.00[AMR][1000 genomes]
rs56242390	1.00[AMR][1000 genomes]
rs57981289	1.00[AMR][1000 genomes]
rs58349358	1.00[AMR][1000 genomes]
rs58442388	1.00[AMR][1000 genomes]
rs59037033	1.00[AMR][1000 genomes]
rs59166161	1.00[AMR][1000 genomes]
rs60135185	1.00[AMR][1000 genomes]
rs61121331	1.00[AMR][1000 genomes]
rs7184886	1.00[AMR][1000 genomes]
rs7196477	1.00[AMR][1000 genomes]
rs73598786	1.00[AMR][1000 genomes]
rs73598792	1.00[AMR][1000 genomes]
rs73600703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73600707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73600711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73600727	1.00[AFR][1000 genomes]
rs73600737	1.00[AMR][1000 genomes]
rs73600744	1.00[AMR][1000 genomes]
rs73600745	1.00[AMR][1000 genomes]
rs73600748	1.00[AMR][1000 genomes]
rs73600749	1.00[AMR][1000 genomes]
rs73600765	1.00[AMR][1000 genomes]
rs73600770	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73603043	1.00[AMR][1000 genomes]
rs73603046	1.00[AMR][1000 genomes]
rs73603049	1.00[AMR][1000 genomes]
rs73603061	1.00[AMR][1000 genomes]
rs8191127	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82021600-82029600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr16:82021800-82030000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr16:82022000-82030000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr16:82023000-82031800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr16:82023600-82036600	Weak transcription	Fetal Kidney	kidney
6	chr16:82024000-82029400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr16:82024400-82030400	Weak transcription	Small Intestine	intestine
8	chr16:82024600-82030000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr16:82024800-82032800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr16:82025200-82030000	Weak transcription	Fetal Intestine Large	intestine
11	chr16:82026400-82030000	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr16:82026600-82030200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr16:82026600-82031000	Weak transcription	Primary hematopoietic stem cells	blood
14	chr16:82027000-82031200	Weak transcription	Fetal Lung	lung
15	chr16:82027200-82028800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr16:82027400-82031400	Weak transcription	Primary B cells from peripheral blood	blood
17	chr16:82027400-82044200	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr16:82027600-82030000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr16:82027600-82030200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr16:82027600-82033200	Weak transcription	Primary B cells from cord blood	blood
21	chr16:82027800-82028400	Strong transcription	Pancreas	Pancrea
22	chr16:82027800-82041600	Strong transcription	Primary T cells from cord blood	blood
23	chr16:82028000-82029600	Enhancers	HUVEC	blood vessel
24	chr16:82028200-82029000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr16:82028200-82029000	Genic enhancers	Fetal Intestine Small	intestine
26	chr16:82028200-82029000	Genic enhancers	Fetal Stomach	stomach
27	chr16:82028200-82029600	Weak transcription	NHEK	skin
28	chr16:82028200-82029800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr16:82028200-82030000	Weak transcription	Thymus	Thymus
30	chr16:82028200-82030400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr16:82028200-82031800	Enhancers	Placenta	Placenta

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