The 2.0 version of rSNPBase

Variant report

Variant rs56242390
Chromosome Location chr16:81959517-81959518
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr16:81909400-81961800 Strong transcription Primary neutrophils fromperipheralblood blood
2 chr16:81920400-81982000 Strong transcription Monocytes-CD14+_RO01746 blood
3 chr16:81924400-81961600 Strong transcription Primary Natural Killer cells fromperipheralblood blood
4 chr16:81924400-81970000 Weak transcription Fetal Intestine Large intestine
5 chr16:81925800-81992600 Weak transcription Sigmoid Colon Sigmoid Colon
6 chr16:81933000-81983600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
7 chr16:81934600-81961200 Weak transcription Colonic Mucosa Colon
8 chr16:81934800-81971600 Weak transcription Right Atrium heart
9 chr16:81936000-81982000 Weak transcription Gastric stomach
10 chr16:81936000-81984600 Strong transcription Primary monocytes fromperipheralblood blood
11 chr16:81937000-81969800 Weak transcription Duodenum Smooth Muscle Duodenum
12 chr16:81941600-81966000 Weak transcription Placenta Placenta
13 chr16:81945000-81984600 Weak transcription Rectal Mucosa Donor 31 rectum
14 chr16:81946200-81985200 Weak transcription Rectal Smooth Muscle rectum
15 chr16:81947000-81969200 Weak transcription Pancreas Pancrea
16 chr16:81950600-81982000 Strong transcription GM12878-XiMat blood
17 chr16:81951200-81962200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
18 chr16:81951400-81971400 Weak transcription Left Ventricle heart
19 chr16:81952000-81982800 Strong transcription Primary B cells from peripheral blood blood
20 chr16:81952400-81983000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
21 chr16:81952600-81970600 Strong transcription Spleen Spleen
22 chr16:81952600-81981800 Strong transcription Primary B cells from cord blood blood
23 chr16:81952800-81973000 Strong transcription Duodenum Mucosa Duodenum
24 chr16:81952800-81984600 Strong transcription Liver Liver
25 chr16:81953000-81977400 Strong transcription Primary mononuclear cells fromperipheralblood Blood
26 chr16:81953400-81962200 Weak transcription Skeletal Muscle Female skeletal muscle
27 chr16:81954800-81962200 Weak transcription Primary T cells fromperipheralblood blood
28 chr16:81954800-81991800 Weak transcription Fetal Thymus thymus
29 chr16:81955400-81970200 Weak transcription Brain Substantia Nigra brain
30 chr16:81956400-81971400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
31 chr16:81956400-81971600 Weak transcription Fetal Kidney kidney
32 chr16:81956800-81962000 Weak transcription HMEC breast
33 chr16:81957000-81971200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
34 chr16:81957400-81961200 Weak transcription Lung lung
35 chr16:81957600-81960600 Weak transcription Rectal Mucosa Donor 29 rectum
36 chr16:81958200-81962800 Strong transcription Fetal Intestine Small intestine
37 chr16:81958400-81960200 Weak transcription Primary hematopoietic stem cells blood
38 chr16:81958600-81960400 Weak transcription Breast Myoepithelial Primary Cells Breast
39 chr16:81958800-81959600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
40 chr16:81958800-81959600 Weak transcription Primary hematopoietic stem cells short term culture blood
41 chr16:81958800-81960600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
42 chr16:81959200-81960800 Weak transcription Adipose Nuclei Adipose

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Last update: Aug 31, 2015