Variant report

Variant	rs73604045
Chromosome Location	chr10:28013253-28013254
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27945241..27946199-chr10:28013100..28013831,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73604042	1.00[AFR][1000 genomes]
rs73604044	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28004800-28014800	Weak transcription	Aorta	Aorta
2	chr10:28007200-28016000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:28011000-28013600	Enhancers	NHDF-Ad	bronchial
4	chr10:28011200-28013400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:28011400-28013400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:28011400-28013400	Enhancers	HSMMtube	muscle
7	chr10:28011800-28013600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:28012000-28014800	Enhancers	Osteobl	bone
9	chr10:28012200-28013400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr10:28012200-28013400	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr10:28012400-28013600	Enhancers	Fetal Muscle Leg	muscle
12	chr10:28012400-28016200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr10:28012600-28013400	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr10:28012600-28013400	Enhancers	H1 Cell Line	embryonic stem cell
15	chr10:28012600-28013400	Enhancers	Rectal Smooth Muscle	rectum
16	chr10:28012600-28013400	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr10:28012800-28014800	Weak transcription	Ovary	ovary
18	chr10:28012800-28020000	Weak transcription	Fetal Stomach	stomach
19	chr10:28013000-28014000	Enhancers	Stomach Smooth Muscle	stomach
20	chr10:28013000-28014600	Weak transcription	Colon Smooth Muscle	Colon
21	chr10:28013200-28013400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr10:28013200-28014400	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr10:28013200-28014400	Enhancers	Monocytes-CD14+_RO01746	blood

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