Variant report

Variant	rs73604044
Chromosome Location	chr10:28011738-28011739
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs73604033	1.00[AMR][1000 genomes]
rs73604036	1.00[AMR][1000 genomes]
rs73604038	1.00[AMR][1000 genomes]
rs73604040	1.00[AMR][1000 genomes]
rs73604041	1.00[AMR][1000 genomes]
rs73604042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604045	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28004800-28014800	Weak transcription	Aorta	Aorta
2	chr10:28006800-28012000	Weak transcription	Osteobl	bone
3	chr10:28007200-28016000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:28011000-28012400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:28011000-28013600	Enhancers	NHDF-Ad	bronchial
6	chr10:28011200-28012400	Enhancers	Stomach Smooth Muscle	stomach
7	chr10:28011200-28013400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:28011400-28012400	Weak transcription	Fetal Stomach	stomach
9	chr10:28011400-28012800	Enhancers	Ovary	ovary
10	chr10:28011400-28013400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:28011400-28013400	Enhancers	HSMMtube	muscle
12	chr10:28011600-28011800	Enhancers	NHLF	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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