Variant report

Variant	rs73604033
Chromosome Location	chr10:27969538-27969539
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs73604036	1.00[AMR][1000 genomes]
rs73604038	1.00[AMR][1000 genomes]
rs73604040	1.00[AMR][1000 genomes]
rs73604041	1.00[AMR][1000 genomes]
rs73604042	1.00[AMR][1000 genomes]
rs73604044	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27967400-27969800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr10:27967400-27970200	Enhancers	Osteobl	bone
3	chr10:27967600-27969600	Enhancers	Fetal Heart	heart
4	chr10:27967800-27969600	Enhancers	Adipose Nuclei	Adipose
5	chr10:27968200-27969600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:27968200-27970000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr10:27968400-27969600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:27968400-27969600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr10:27968400-27969600	Enhancers	Colon Smooth Muscle	Colon
10	chr10:27968400-27971600	Enhancers	Fetal Stomach	stomach
11	chr10:27968600-27969600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:27968800-27969600	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr10:27968800-27970000	Enhancers	Aorta	Aorta
14	chr10:27969200-27970200	Enhancers	Fetal Lung	lung
15	chr10:27969200-27970200	Enhancers	Stomach Smooth Muscle	stomach
16	chr10:27969200-27973400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr10:27969400-27969800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr10:27969400-27969800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr10:27969400-27969800	Weak transcription	Fetal Muscle Leg	muscle
20	chr10:27969400-27971000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr10:27969400-27973600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:27969400-27976400	Weak transcription	Ovary	ovary

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