Variant report

Variant	rs73604040
Chromosome Location	chr10:27984479-27984480
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs73604033	1.00[AMR][1000 genomes]
rs73604036	1.00[AMR][1000 genomes]
rs73604038	1.00[AMR][1000 genomes]
rs73604041	1.00[AMR][1000 genomes]
rs73604042	1.00[AMR][1000 genomes]
rs73604044	1.00[AMR][1000 genomes]
rs73604046	0.86[AFR][1000 genomes]
rs73604048	0.86[AFR][1000 genomes]
rs73604052	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27982200-27984600	Weak transcription	Colon Smooth Muscle	Colon
2	chr10:27982400-27988800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr10:27983800-27984600	Enhancers	Ovary	ovary
4	chr10:27984000-27984600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:27984000-27985400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:27984000-27985800	Enhancers	Aorta	Aorta
7	chr10:27984000-27985800	Enhancers	Osteobl	bone
8	chr10:27984400-27985200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr10:27984400-27985600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:27984400-27985800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:27984400-27986200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr10:27984400-27990800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr10:27984400-27990800	Weak transcription	Rectal Smooth Muscle	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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