Variant report

Variant	rs73604048
Chromosome Location	chr10:28017025-28017026
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:28016537..28019531-chr10:28020937..28024001,3	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs57933197	1.00[AMR][1000 genomes]
rs73604023	1.00[AMR][1000 genomes]
rs73604040	0.86[AFR][1000 genomes]
rs73604046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604053	1.00[AMR][1000 genomes]
rs73604057	1.00[AMR][1000 genomes]
rs73604064	1.00[AMR][1000 genomes]
rs73604066	1.00[AMR][1000 genomes]
rs73604067	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28012800-28020000	Weak transcription	Fetal Stomach	stomach
2	chr10:28013400-28020400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr10:28014000-28017600	Active TSS	Stomach Smooth Muscle	stomach
4	chr10:28015000-28017400	Active TSS	Ovary	ovary
5	chr10:28015400-28017400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr10:28015800-28017600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr10:28016000-28017200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr10:28016000-28017600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:28016200-28017200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr10:28016200-28017400	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr10:28016400-28017200	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr10:28016600-28017600	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr10:28016600-28024000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr10:28016800-28017400	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr10:28016800-28017400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr10:28016800-28017600	Active TSS	Aorta	Aorta
17	chr10:28016800-28017600	Flanking Active TSS	Osteobl	bone
18	chr10:28016800-28018000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr10:28017000-28017600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr10:28017000-28017600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links