Variant report
| Variant | rs73604057 |
|---|---|
| Chromosome Location | chr10:28036851-28036852 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000150051 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs56025636 | 1.00[EUR][1000 genomes] |
| rs56116242 | 1.00[EUR][1000 genomes] |
| rs57933197 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73604023 | 1.00[AMR][1000 genomes] |
| rs73604046 | 1.00[AMR][1000 genomes] |
| rs73604048 | 1.00[AMR][1000 genomes] |
| rs73604052 | 1.00[AMR][1000 genomes] |
| rs73604053 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73604061 | 1.00[EUR][1000 genomes] |
| rs73604062 | 1.00[EUR][1000 genomes] |
| rs73604064 | 1.00[AMR][1000 genomes] |
| rs73604066 | 1.00[AMR][1000 genomes] |
| rs73604067 | 1.00[AMR][1000 genomes] |
| rs73604068 | 1.00[EUR][1000 genomes] |
| rs73604073 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3368825 | chr10:27864181-28043820 | Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv831813 | chr10:28017606-28200651 | Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv917149 | chr10:28018919-28688694 | Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:28035800-28063200 | Weak transcription | Aorta | Aorta |
