Variant report

Variant	rs73604041
Chromosome Location	chr10:28005277-28005278
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs73604033	1.00[AMR][1000 genomes]
rs73604036	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604038	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604040	1.00[AMR][1000 genomes]
rs73604042	1.00[AMR][1000 genomes]
rs73604044	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28003600-28005400	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr10:28004000-28006800	Enhancers	Osteobl	bone
3	chr10:28004000-28007000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:28004400-28006600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr10:28004600-28006200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:28004800-28005800	Weak transcription	NHDF-Ad	bronchial
7	chr10:28004800-28006000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr10:28004800-28006000	Weak transcription	Psoas Muscle	Psoas
9	chr10:28004800-28006400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:28004800-28011200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr10:28004800-28011400	Weak transcription	Ovary	ovary
12	chr10:28004800-28014800	Weak transcription	Aorta	Aorta
13	chr10:28005000-28006600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr10:28005200-28005400	Bivalent Enhancer	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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