Variant report

Variant	rs73604087
Chromosome Location	chr10:28154796-28154797
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs7096753	1.00[AMR][1000 genomes]
rs73604086	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604091	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604093	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604094	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604095	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7894399	1.00[AMR][1000 genomes]
rs7902862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7908864	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831813	chr10:28017606-28200651	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv971859	chr10:28070066-28271252	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv550283	chr10:28144330-28167326	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28121000-28158600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:28153600-28155000	Enhancers	HMEC	breast
3	chr10:28153800-28154800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr10:28153800-28154800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:28153800-28155000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr10:28154000-28154800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr10:28154200-28154800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:28154400-28154800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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