Variant report

Variant	rs73604093
Chromosome Location	chr10:28173750-28173751
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs7096753	1.00[AMR][1000 genomes]
rs73604086	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604087	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604091	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604092	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604094	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604095	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7894399	1.00[AMR][1000 genomes]
rs7902862	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7908864	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831813	chr10:28017606-28200651	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv971859	chr10:28070066-28271252	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv894987	chr10:28165502-28326775	ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28161000-28181800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:28172600-28174800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr10:28173400-28173800	Enhancers	Primary T cells from cord blood	blood
4	chr10:28173600-28173800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr10:28173600-28183400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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