Variant report

Variant	rs73604983
Chromosome Location	chr14:24699797-24699798
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:24699754-24707843	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:24698279..24701346-chr14:24909291..24912292,3	MCF-7	breast:
2	chr14:24681838..24686459-chr14:24698203..24703209,7	K562	blood:
3	chr14:24614827..24617207-chr14:24699385..24702820,4	MCF-7	breast:
4	chr14:24656607..24659161-chr14:24696896..24699853,4	MCF-7	breast:
5	chr14:24609208..24611356-chr14:24699295..24702629,3	MCF-7	breast:
6	chr10:104032194..104033020-chr14:24699780..24700771,2	MCF-7	breast:

No data

Variant related genes	Relation type
GMPR2	TF binding region
ENSG00000254505	Chromatin interaction
ENSG00000100908	Chromatin interaction
ENSG00000100445	Chromatin interaction
ENSG00000092098	Chromatin interaction
ENSG00000196497	Chromatin interaction
ENSG00000100911	Chromatin interaction
ENSG00000254692	Chromatin interaction
ENSG00000260669	Chromatin interaction
ENSG00000213920	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17102177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35692401	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73589609	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73589611	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73589614	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73589622	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604958	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604965	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604967	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604981	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24685400-24700000	Weak transcription	Spleen	Spleen
2	chr14:24685400-24700200	Weak transcription	Colonic Mucosa	Colon
3	chr14:24685400-24700200	Weak transcription	Gastric	stomach
4	chr14:24685400-24700400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr14:24685600-24700200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr14:24685600-24700200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr14:24685600-24700200	Weak transcription	Esophagus	oesophagus
8	chr14:24685600-24700200	Weak transcription	Psoas Muscle	Psoas
9	chr14:24685600-24700200	Weak transcription	Thymus	Thymus
10	chr14:24685600-24700400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr14:24685600-24700400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr14:24685600-24700400	Weak transcription	Fetal Kidney	kidney
13	chr14:24685600-24700400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr14:24685600-24700400	Weak transcription	K562	blood
15	chr14:24685600-24700600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr14:24685800-24700000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr14:24685800-24700000	Weak transcription	Colon Smooth Muscle	Colon
18	chr14:24685800-24700000	Weak transcription	Lung	lung
19	chr14:24685800-24700200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr14:24685800-24700200	Weak transcription	Brain Anterior Caudate	brain
21	chr14:24685800-24700200	Weak transcription	Brain Cingulate Gyrus	brain
22	chr14:24685800-24700200	Weak transcription	Brain Germinal Matrix	brain
23	chr14:24685800-24700200	Weak transcription	Brain Hippocampus Middle	brain
24	chr14:24685800-24700200	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr14:24685800-24700200	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr14:24685800-24700400	Weak transcription	Brain Angular Gyrus	brain
27	chr14:24686000-24700000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr14:24686000-24700000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr14:24686000-24700000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr14:24686200-24700000	Weak transcription	Fetal Brain Male	brain
31	chr14:24686200-24700400	Weak transcription	Stomach Mucosa	stomach
32	chr14:24687600-24700000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr14:24687600-24700200	Weak transcription	Right Ventricle	heart
34	chr14:24687600-24700200	Weak transcription	Stomach Smooth Muscle	stomach
35	chr14:24687600-24700800	Weak transcription	Aorta	Aorta
36	chr14:24687800-24699800	Weak transcription	Primary B cells from cord blood	blood
37	chr14:24687800-24700000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr14:24687800-24700000	Weak transcription	Brain Substantia Nigra	brain
39	chr14:24687800-24700000	Weak transcription	Duodenum Mucosa	Duodenum
40	chr14:24687800-24700000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr14:24687800-24700000	Weak transcription	Fetal Muscle Leg	muscle
42	chr14:24687800-24700200	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr14:24687800-24700200	Weak transcription	Adipose Nuclei	Adipose
44	chr14:24687800-24700200	Weak transcription	Fetal Lung	lung
45	chr14:24687800-24700200	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr14:24687800-24700200	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr14:24687800-24700200	Weak transcription	GM12878-XiMat	blood
48	chr14:24687800-24700400	Weak transcription	Primary T cells from cord blood	blood
49	chr14:24687800-24700800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr14:24688000-24700000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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