Variant report

Variant	rs73589614
Chromosome Location	chr14:24712917-24712918
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:36)
CpG islands
(count:0)
Chromatin interactive
region (count:20)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:36 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr14:24710811-24712975	SK-N-SH	brain:	n/a	chr14:24712263-24712279 chr14:24712264-24712285 chr14:24712262-24712280 chr14:24711551-24711564
2	SIN3AK20	chr14:24710935-24712943	MCF-7	breast:	n/a	n/a
3	POLR2A	chr14:24712590-24713034	GM12892	blood:	n/a	n/a
4	MAX	chr14:24710793-24713351	HepG2	liver:	n/a	n/a
5	POLR2A	chr14:24710732-24713277	GM12878	blood:	n/a	n/a
6	CUX1	chr14:24712545-24713105	K562	blood:	n/a	n/a
7	POLR2A	chr14:24710756-24713191	HepG2	liver:	n/a	n/a
8	FOSL2	chr14:24710818-24713011	HepG2	liver:	n/a	n/a
9	POLR2A	chr14:24711016-24713172	GM12878	blood:	n/a	n/a
10	MYBL2	chr14:24710738-24713310	HepG2	liver:	n/a	n/a
11	WRNIP1	chr14:24712677-24713131	GM12878	blood:	n/a	n/a
12	ZNF384	chr14:24711553-24713018	K562	blood:	n/a	n/a
13	MBD4	chr14:24710743-24713323	HepG2	liver:	n/a	n/a
14	POLR2A	chr14:24710770-24713303	MCF10A-Er-Src	breast:	n/a	n/a
15	ELF1	chr14:24710833-24713045	HepG2	liver:	n/a	chr14:24711830-24711839 chr14:24711542-24711554 chr14:24711554-24711563 chr14:24711829-24711840
16	MYBL2	chr14:24710670-24713299	HepG2	liver:	n/a	n/a
17	USF2	chr14:24712673-24713002	Hela-S3	cervix:	n/a	chr14:24712729-24712740
18	ELF1	chr14:24710810-24713201	MCF-7	breast:	n/a	chr14:24711830-24711839 chr14:24711542-24711554 chr14:24711554-24711563 chr14:24711829-24711840
19	JUND	chr14:24712466-24712949	HepG2	liver:	n/a	chr14:24712642-24712653
20	MAX	chr14:24710812-24713239	MCF-7	breast:	n/a	n/a
21	POLR2A	chr14:24710944-24712961	GM12891	blood:	n/a	n/a
22	ZNF384	chr14:24711682-24713053	GM12878	blood:	n/a	n/a
23	POLR2A	chr14:24710859-24714651	MCF10A-Er-Src	breast:	n/a	n/a
24	MXI1	chr14:24710731-24713295	SK-N-SH	brain:	n/a	n/a
25	POLR2A	chr14:24711086-24713188	K562	blood:	n/a	n/a
26	POLR2A	chr14:24712607-24713243	ECC-1	luminal epithelium:	n/a	n/a
27	CREB1	chr14:24710810-24713152	HepG2	liver:	n/a	n/a
28	FOS	chr14:24711654-24712964	HUVEC	blood vessel:	n/a	n/a
29	POLR2A	chr14:24707268-24713121	HepG2	liver:	n/a	n/a
30	NFIC	chr14:24710898-24712982	HepG2	liver:	n/a	n/a
31	MAX	chr14:24712530-24713041	K562	blood:	n/a	n/a
32	TEAD4	chr14:24710792-24713049	HepG2	liver:	n/a	n/a
33	MAX	chr14:24711089-24713009	HCT-116	colon:	n/a	n/a
34	RAD21	chr14:24711131-24713315	SK-N-SH	brain:	n/a	chr14:24712263-24712282
35	POLR2A	chr14:24710917-24713028	HUVEC	blood vessel:	n/a	n/a
36	POLR2A	chr14:24710844-24712963	K562	blood:	n/a	n/a

No data

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:24581877..24583697-chr14:24712197..24714033,2	K562	blood:
2	chr14:24682802..24685207-chr14:24711355..24714494,4	K562	blood:
3	chr14:24710306..24713162-chr14:24834355..24837181,3	MCF-7	breast:
4	chr14:24709552..24713134-chr14:24898718..24901467,5	MCF-7	breast:
5	chr14:24711926..24713441-chr14:24728072..24729848,2	K562	blood:
6	chr14:24711967..24714096-chr14:24723458..24727620,4	K562	blood:
7	chr14:24712622..24713495-chr14:24768535..24769517,2	MCF-7	breast:
8	chr14:24656097..24659538-chr14:24709665..24713530,7	MCF-7	breast:
9	chr14:24710202..24713274-chr14:24777163..24780691,4	K562	blood:
10	chr14:24710493..24713129-chr14:24782481..24785147,3	K562	blood:
11	chr14:24709884..24713728-chr14:24799730..24804763,6	MCF-7	breast:
12	chr14:24711225..24713495-chr14:24896859..24899429,2	K562	blood:
13	chr14:24711970..24713613-chr14:24750693..24753495,2	K562	blood:
14	chr14:24709953..24714493-chr14:24766859..24769769,8	K562	blood:
15	chr14:24710331..24713124-chr14:24894765..24900704,5	MCF-7	breast:
16	chr14:24709953..24713670-chr14:24767111..24769746,6	K562	blood:
17	chr14:24710704..24713128-chr14:24738885..24741180,4	K562	blood:
18	chr14:24711870..24713626-chr14:24841435..24843372,2	K562	blood:
19	chr14:24708551..24715320-chr14:24722643..24727115,8	K562	blood:
20	chr14:24710128..24713467-chr14:24737949..24741923,9	K562	blood:

No data

Variant related genes	Relation type
TINF2	TF binding region
ENSG00000100441	Chromatin interaction
ENSG00000136305	Chromatin interaction
ENSG00000129467	Chromatin interaction
ENSG00000100949	Chromatin interaction
ENSG00000157379	Chromatin interaction
ENSG00000196497	Chromatin interaction
ENSG00000260669	Chromatin interaction
ENSG00000139899	Chromatin interaction
ENSG00000100968	Chromatin interaction
ENSG00000196943	Chromatin interaction
ENSG00000213903	Chromatin interaction
ENSG00000100897	Chromatin interaction
ENSG00000254505	Chromatin interaction
ENSG00000213906	Chromatin interaction
ENSG00000092295	Chromatin interaction
ENSG00000213920	Chromatin interaction
ENSG00000272658	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17102177	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17102313	0.83[AFR][1000 genomes]
rs34113897	0.83[AFR][1000 genomes]
rs35692401	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41293956	0.84[AFR][1000 genomes]
rs73589609	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73589611	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73589619	0.84[AFR][1000 genomes]
rs73589622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604958	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604965	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604967	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604981	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604983	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24710600-24713000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
2	chr14:24710600-24713200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr14:24710800-24713000	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr14:24710800-24713000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr14:24711000-24713200	Active TSS	Aorta	Aorta
6	chr14:24711200-24713200	Active TSS	Fetal Kidney	kidney
7	chr14:24712000-24713000	Flanking Active TSS	Primary hematopoietic stem cells	blood
8	chr14:24712000-24713200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr14:24712200-24713000	Flanking Active TSS	Primary B cells from cord blood	blood
10	chr14:24712200-24723200	Weak transcription	Gastric	stomach
11	chr14:24712200-24724200	Weak transcription	Ovary	ovary
12	chr14:24712400-24713000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
13	chr14:24712400-24713000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
14	chr14:24712400-24713000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
15	chr14:24712400-24713000	Flanking Active TSS	Adipose Nuclei	Adipose
16	chr14:24712400-24713000	Flanking Active TSS	Colonic Mucosa	Colon
17	chr14:24712400-24713000	Enhancers	Fetal Heart	heart
18	chr14:24712400-24713000	Flanking Active TSS	HMEC	breast
19	chr14:24712400-24713200	Flanking Active TSS	Brain Germinal Matrix	brain
20	chr14:24712400-24713200	Flanking Active TSS	Duodenum Mucosa	Duodenum
21	chr14:24712400-24713200	Flanking Active TSS	Placenta	Placenta
22	chr14:24712400-24713200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
23	chr14:24712400-24713200	Flanking Active TSS	Dnd41	blood
24	chr14:24712400-24713200	Flanking Active TSS	K562	blood
25	chr14:24712600-24713000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr14:24712600-24713000	Flanking Active TSS	H9 Cell Line	embryonic stem cell
27	chr14:24712600-24713000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr14:24712600-24713000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr14:24712600-24713000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
30	chr14:24712600-24713000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr14:24712600-24713000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr14:24712600-24713000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr14:24712600-24713000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
34	chr14:24712600-24713000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
35	chr14:24712600-24713000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
36	chr14:24712600-24713000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr14:24712600-24713000	Enhancers	Brain Angular Gyrus	brain
38	chr14:24712600-24713000	Flanking Active TSS	Brain Cingulate Gyrus	brain
39	chr14:24712600-24713000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
40	chr14:24712600-24713000	Flanking Active TSS	Colon Smooth Muscle	Colon
41	chr14:24712600-24713000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
42	chr14:24712600-24713000	Flanking Active TSS	Fetal Brain Male	brain
43	chr14:24712600-24713000	Flanking Active TSS	Fetal Brain Female	brain
44	chr14:24712600-24713000	Flanking Active TSS	Fetal Lung	lung
45	chr14:24712600-24713000	Enhancers	Left Ventricle	heart
46	chr14:24712600-24713000	Enhancers	Pancreas	Pancrea
47	chr14:24712600-24713000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
48	chr14:24712600-24713000	Flanking Active TSS	NHLF	lung
49	chr14:24712600-24713200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr14:24712600-24713200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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