Variant report

Variant	rs73589619
Chromosome Location	chr14:24713232-24713233
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:13)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:13 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr14:24710793-24713351	HepG2	liver:	n/a	n/a
2	POLR2A	chr14:24710732-24713277	GM12878	blood:	n/a	n/a
3	TCF7L2	chr14:24713070-24713258	Hela-S3	cervix:	n/a	n/a
4	MYBL2	chr14:24710738-24713310	HepG2	liver:	n/a	n/a
5	MBD4	chr14:24710743-24713323	HepG2	liver:	n/a	n/a
6	POLR2A	chr14:24710770-24713303	MCF10A-Er-Src	breast:	n/a	n/a
7	MYBL2	chr14:24710670-24713299	HepG2	liver:	n/a	n/a
8	POLR2A	chr14:24713161-24713256	K562	blood:	n/a	n/a
9	MAX	chr14:24710812-24713239	MCF-7	breast:	n/a	n/a
10	POLR2A	chr14:24710859-24714651	MCF10A-Er-Src	breast:	n/a	n/a
11	MXI1	chr14:24710731-24713295	SK-N-SH	brain:	n/a	n/a
12	POLR2A	chr14:24712607-24713243	ECC-1	luminal epithelium:	n/a	n/a
13	RAD21	chr14:24711131-24713315	SK-N-SH	brain:	n/a	chr14:24712263-24712282

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:24581877..24583697-chr14:24712197..24714033,2	K562	blood:
2	chr14:24682802..24685207-chr14:24711355..24714494,4	K562	blood:
3	chr14:24711926..24713441-chr14:24728072..24729848,2	K562	blood:
4	chr14:24711967..24714096-chr14:24723458..24727620,4	K562	blood:
5	chr14:24712622..24713495-chr14:24768535..24769517,2	MCF-7	breast:
6	chr14:24656097..24659538-chr14:24709665..24713530,7	MCF-7	breast:
7	chr14:24710202..24713274-chr14:24777163..24780691,4	K562	blood:
8	chr14:24709884..24713728-chr14:24799730..24804763,6	MCF-7	breast:
9	chr14:24711225..24713495-chr14:24896859..24899429,2	K562	blood:
10	chr14:24711970..24713613-chr14:24750693..24753495,2	K562	blood:
11	chr14:24709953..24714493-chr14:24766859..24769769,8	K562	blood:
12	chr14:24709953..24713670-chr14:24767111..24769746,6	K562	blood:
13	chr14:24711870..24713626-chr14:24841435..24843372,2	K562	blood:
14	chr14:24708551..24715320-chr14:24722643..24727115,8	K562	blood:
15	chr14:24710128..24713467-chr14:24737949..24741923,9	K562	blood:

No data

Variant related genes	Relation type
TINF2	TF binding region
ENSG00000213903	Chromatin interaction
ENSG00000100968	Chromatin interaction
ENSG00000196943	Chromatin interaction
ENSG00000157379	Chromatin interaction
ENSG00000129467	Chromatin interaction
ENSG00000100949	Chromatin interaction
ENSG00000092295	Chromatin interaction
ENSG00000260669	Chromatin interaction
ENSG00000213906	Chromatin interaction
ENSG00000136305	Chromatin interaction
ENSG00000213920	Chromatin interaction
ENSG00000196497	Chromatin interaction
ENSG00000139899	Chromatin interaction
ENSG00000272658	Chromatin interaction
ENSG00000254505	Chromatin interaction
ENSG00000100441	Chromatin interaction
ENSG00000100897	Chromatin interaction

rs_ID	r²[population]
rs17102313	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34113897	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73589609	0.83[AFR][1000 genomes]
rs73589614	0.84[AFR][1000 genomes]
rs73589622	0.84[AFR][1000 genomes]
rs73604981	0.83[AFR][1000 genomes]

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24712200-24723200	Weak transcription	Gastric	stomach
2	chr14:24712200-24724200	Weak transcription	Ovary	ovary
3	chr14:24712600-24713400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr14:24712600-24713400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr14:24712600-24720600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr14:24712600-24727600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr14:24712600-24740000	Weak transcription	Small Intestine	intestine
8	chr14:24712800-24713400	Enhancers	Primary B cells from peripheral blood	blood
9	chr14:24712800-24713400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr14:24712800-24713400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr14:24712800-24714000	Enhancers	Primary T cells fromperipheralblood	blood
12	chr14:24712800-24717200	Weak transcription	Esophagus	oesophagus
13	chr14:24712800-24718200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr14:24712800-24721000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr14:24712800-24723800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr14:24713000-24713400	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr14:24713000-24713400	Enhancers	Primary B cells from cord blood	blood
18	chr14:24713000-24713400	Enhancers	Primary hematopoietic stem cells	blood
19	chr14:24713000-24713400	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr14:24713000-24713400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr14:24713000-24713400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr14:24713000-24718400	Weak transcription	Fetal Stomach	stomach
23	chr14:24713000-24722000	Weak transcription	Fetal Brain Female	brain
24	chr14:24713000-24723000	Weak transcription	Brain Angular Gyrus	brain
25	chr14:24713000-24723200	Weak transcription	Fetal Muscle Trunk	muscle
26	chr14:24713000-24723400	Weak transcription	Brain Cingulate Gyrus	brain
27	chr14:24713000-24723400	Weak transcription	Pancreas	Pancrea
28	chr14:24713000-24734200	Weak transcription	Left Ventricle	heart
29	chr14:24713000-24740000	Weak transcription	Right Atrium	heart
30	chr14:24713200-24713400	Enhancers	Primary neutrophils fromperipheralblood	blood
31	chr14:24713200-24713400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr14:24713200-24713400	Enhancers	Dnd41	blood
33	chr14:24713200-24713400	Enhancers	GM12878-XiMat	blood
34	chr14:24713200-24713600	Enhancers	HepG2	liver
35	chr14:24713200-24713800	Active TSS	Placenta	Placenta
36	chr14:24713200-24714600	Weak transcription	NHDF-Ad	bronchial
37	chr14:24713200-24714800	Enhancers	Monocytes-CD14+_RO01746	blood
38	chr14:24713200-24715600	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr14:24713200-24715600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr14:24713200-24715600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr14:24713200-24715800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr14:24713200-24715800	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr14:24713200-24715800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr14:24713200-24715800	Weak transcription	Duodenum Mucosa	Duodenum
45	chr14:24713200-24715800	Weak transcription	Fetal Intestine Large	intestine
46	chr14:24713200-24715800	Weak transcription	Fetal Intestine Small	intestine
47	chr14:24713200-24715800	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr14:24713200-24715800	Weak transcription	Stomach Mucosa	stomach
49	chr14:24713200-24716000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr14:24713200-24716000	Weak transcription	Primary T helper naive cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links