Variant report

Variant	rs17102313
Chromosome Location	chr14:24709976-24709977
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:23)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:23 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr14:24709860-24710010	AG10803	skin:	n/a	n/a
2	POLR2A	chr14:24709963-24710021	K562	blood:	n/a	n/a
3	POLR2A	chr14:24709893-24709979	ProgFib	skin:	n/a	n/a
4	POLR2A	chr14:24709417-24710110	HL-60	blood:	n/a	n/a
5	CTCF	chr14:24709840-24709990	HCPEpiC	choroid plexus:	n/a	n/a
6	POLR2A	chr14:24708835-24710639	HepG2	liver:	n/a	n/a
7	POLR2A	chr14:24709431-24710027	GM12891	blood:	n/a	n/a
8	POLR2A	chr14:24709551-24709987	SK-N-SH	brain:	n/a	n/a
9	POLR2A	chr14:24709322-24710054	GM12892	blood:	n/a	n/a
10	CTCF	chr14:24709940-24710090	GM12873	blood:	n/a	n/a
11	POLR2A	chr14:24704543-24710046	K562	blood:	n/a	n/a
12	POLR2A	chr14:24709484-24710019	GM12878	blood:	n/a	n/a
13	POLR2A	chr14:24708861-24710020	GM12892	blood:	n/a	n/a
14	POLR2A	chr14:24707268-24713121	HepG2	liver:	n/a	n/a
15	POLR2A	chr14:24708822-24710704	H1-hESC	embryonic stem cell:	n/a	n/a
16	POLR2A	chr14:24708957-24710004	Hela-S3	cervix:	n/a	n/a
17	POLR2A	chr14:24707033-24712697	SK-N-MC	brain:	n/a	n/a
18	POLR2A	chr14:24705638-24710665	GM12892	blood:	n/a	n/a
19	POLR2A	chr14:24708332-24710632	GM12878	blood:	n/a	n/a
20	POLR2A	chr14:24709290-24710068	HepG2	liver:	n/a	n/a
21	POLR2A	chr14:24700264-24710645	HepG2	liver:	n/a	n/a
22	MBD4	chr14:24709508-24710587	HepG2	liver:	n/a	n/a
23	POLR2A	chr14:24709573-24710099	K562	blood:	n/a	n/a

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:24682906..24687740-chr14:24707883..24712855,6	K562	blood:
2	chr14:24605228..24606907-chr14:24708276..24711256,2	MCF-7	breast:
3	chr14:24709552..24713134-chr14:24898718..24901467,5	MCF-7	breast:
4	chr14:24706492..24710014-chr14:24739300..24741823,3	K562	blood:
5	chr14:24656097..24659538-chr14:24709665..24713530,7	MCF-7	breast:
6	chr14:24709885..24712495-chr14:24729167..24732182,3	K562	blood:
7	chr14:24709884..24713728-chr14:24799730..24804763,6	MCF-7	breast:
8	chr14:24708705..24711391-chr14:24835145..24836827,2	MCF-7	breast:
9	chr14:24708551..24710977-chr14:24722643..24724983,2	K562	blood:
10	chr14:24709335..24712189-chr14:24910783..24914037,3	K562	blood:
11	chr14:24709953..24714493-chr14:24766859..24769769,8	K562	blood:
12	chr14:24709953..24713670-chr14:24767111..24769746,6	K562	blood:
13	chr14:24708551..24715320-chr14:24722643..24727115,8	K562	blood:

No data

Variant related genes	Relation type
TINF2	TF binding region
ENSG00000213920	Chromatin interaction
ENSG00000092295	Chromatin interaction
ENSG00000196943	Chromatin interaction
ENSG00000139899	Chromatin interaction
ENSG00000260669	Chromatin interaction
ENSG00000100441	Chromatin interaction
ENSG00000157379	Chromatin interaction
ENSG00000129467	Chromatin interaction
ENSG00000092010	Chromatin interaction
ENSG00000100949	Chromatin interaction
ENSG00000196497	Chromatin interaction
ENSG00000254505	Chromatin interaction
ENSG00000100445	Chromatin interaction
ENSG00000100968	Chromatin interaction

rs_ID	r²[population]
rs17102177	0.85[YRI][hapmap]
rs34113897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73589609	0.81[AFR][1000 genomes]
rs73589614	0.83[AFR][1000 genomes]
rs73589619	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73589622	0.83[AFR][1000 genomes]
rs73604981	0.81[AFR][1000 genomes]

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24702800-24711200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr14:24703000-24711000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:24703400-24710200	Strong transcription	HUES64 Cell Line	embryonic stem cell
4	chr14:24703400-24710400	Strong transcription	ES-I3 Cell Line	embryonic stem cell
5	chr14:24703400-24710400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
6	chr14:24703400-24710400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr14:24703400-24710600	Strong transcription	HUES48 Cell Line	embryonic stem cell
8	chr14:24703800-24710400	Strong transcription	H1 Cell Line	embryonic stem cell
9	chr14:24703800-24710400	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr14:24704000-24710600	Strong transcription	H9 Cell Line	embryonic stem cell
11	chr14:24704200-24710000	Strong transcription	A549	lung
12	chr14:24704200-24710600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr14:24704400-24710200	Strong transcription	K562	blood
14	chr14:24704600-24710200	Strong transcription	Sigmoid Colon	Sigmoid Colon
15	chr14:24705000-24710000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr14:24705600-24710400	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr14:24705800-24710400	Genic enhancers	Right Ventricle	heart
18	chr14:24706000-24710200	Genic enhancers	Primary neutrophils fromperipheralblood	blood
19	chr14:24706000-24710400	Genic enhancers	HSMM	muscle
20	chr14:24706400-24710800	Genic enhancers	Primary T cells fromperipheralblood	blood
21	chr14:24706600-24710200	Genic enhancers	NHDF-Ad	bronchial
22	chr14:24707200-24710400	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr14:24707200-24710800	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr14:24707200-24710800	Genic enhancers	HMEC	breast
25	chr14:24707400-24710000	Genic enhancers	Placenta Amnion	Placenta Amnion
26	chr14:24707400-24710200	Genic enhancers	Dnd41	blood
27	chr14:24707400-24710400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr14:24707400-24710600	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr14:24707400-24710600	Genic enhancers	Pancreas	Pancrea
30	chr14:24707400-24710800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr14:24707400-24710800	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr14:24707400-24710800	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
33	chr14:24707400-24710800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
34	chr14:24707400-24710800	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
35	chr14:24707400-24710800	Genic enhancers	Placenta	Placenta
36	chr14:24707400-24710800	Genic enhancers	Osteobl	bone
37	chr14:24707600-24710200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr14:24707600-24710600	Genic enhancers	Primary hematopoietic stem cells	blood
39	chr14:24707600-24710600	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
40	chr14:24707600-24710600	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr14:24707600-24710800	Genic enhancers	Primary T cells from cord blood	blood
42	chr14:24707800-24710200	Genic enhancers	Adipose Nuclei	Adipose
43	chr14:24707800-24710400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr14:24707800-24710600	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
45	chr14:24707800-24710600	Genic enhancers	HUVEC	blood vessel
46	chr14:24707800-24710600	Genic enhancers	NH-A	brain
47	chr14:24707800-24710800	Genic enhancers	Primary B cells from cord blood	blood
48	chr14:24707800-24710800	Genic enhancers	Muscle Satellite Cultured Cells	--
49	chr14:24707800-24710800	Enhancers	Pancreatic Islets	Pancreatic Islet
50	chr14:24708000-24710200	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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