Variant report

Variant	rs73609308
Chromosome Location	chr11:104276502-104276503
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:104263922..104265459-chr11:104276498..104278542,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12277175	1.00[AMR][1000 genomes]
rs1386660	1.00[AMR][1000 genomes]
rs17102633	1.00[AMR][1000 genomes]
rs4505034	1.00[AMR][1000 genomes]
rs58283919	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58801293	1.00[AMR][1000 genomes]
rs73607626	1.00[AMR][1000 genomes]
rs73607680	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73607683	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73607685	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73609310	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73611644	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73611659	0.94[AFR][1000 genomes]
rs73611676	0.82[AFR][1000 genomes]
rs73614131	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73614135	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73620028	1.00[AMR][1000 genomes]
rs73621713	1.00[AMR][1000 genomes]
rs73621718	1.00[AMR][1000 genomes]
rs7933741	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760322	chr11:103760085-104374141	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1043976	chr11:103881236-104526403	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1040367	chr11:103956747-104440470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1044271	chr11:104136156-104666252	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1046098	chr11:104207210-105003661	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	nsv1038945	chr11:104223281-104302611	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv898350	chr11:104261833-104372318	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv468	chr11:104262893-104284098	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv556208	chr11:104269321-104279617	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv1831620	chr11:104269750-104296079	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv898351	chr11:104274535-104368709	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv898352	chr11:104274535-104452042	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	nsv898353	chr11:104274535-104497607	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104273800-104276800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:104274000-104276800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr11:104274200-104276600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr11:104275800-104276800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr11:104276000-104279000	Weak transcription	Fetal Heart	heart

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