Variant report

Variant	rs73611659
Chromosome Location	chr11:104305719-104305720
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1027110	1.00[AMR][1000 genomes]
rs57007212	1.00[AMR][1000 genomes]
rs58283919	0.94[AFR][1000 genomes]
rs58801293	0.83[AFR][1000 genomes]
rs73607680	0.94[AFR][1000 genomes]
rs73607683	0.94[AFR][1000 genomes]
rs73607685	0.94[AFR][1000 genomes]
rs73609111	1.00[AMR][1000 genomes]
rs73609114	1.00[AMR][1000 genomes]
rs73609169	1.00[AMR][1000 genomes]
rs73609308	0.94[AFR][1000 genomes]
rs73609310	1.00[AFR][1000 genomes]
rs73611644	1.00[AFR][1000 genomes]
rs73611676	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73612016	1.00[AMR][1000 genomes]
rs73614131	0.88[AFR][1000 genomes]
rs73614135	0.88[AFR][1000 genomes]
rs993564	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760322	chr11:103760085-104374141	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1043976	chr11:103881236-104526403	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1040367	chr11:103956747-104440470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1044271	chr11:104136156-104666252	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1046098	chr11:104207210-105003661	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	nsv898350	chr11:104261833-104372318	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv898351	chr11:104274535-104368709	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv898352	chr11:104274535-104452042	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv898353	chr11:104274535-104497607	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv428579	chr11:104298339-104459797	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104303600-104306400	Enhancers	Fetal Heart	heart
2	chr11:104304600-104306400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr11:104305000-104306600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:104305200-104305800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr11:104305200-104306400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr11:104305200-104306600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:104305400-104305800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:104305400-104306000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr11:104305400-104306600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr11:104305600-104306400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:104305600-104306400	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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