Variant report

Variant	rs73609714
Chromosome Location	chr10:18332956-18332957
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs58948589	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73591712	1.00[AMR][1000 genomes]
rs73591718	1.00[AMR][1000 genomes]
rs73591728	1.00[AMR][1000 genomes]
rs73609756	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73609758	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415320	chr10:18122232-18333356	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1039655	chr10:18252931-18348954	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv894914	chr10:18301221-18335200	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18325600-18333600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:18330000-18333400	Weak transcription	Aorta	Aorta
3	chr10:18331200-18335200	Enhancers	NH-A	brain
4	chr10:18331400-18335200	Enhancers	Osteobl	bone
5	chr10:18331600-18334200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr10:18331600-18348800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr10:18331800-18333000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr10:18332400-18333400	Weak transcription	NHLF	lung
9	chr10:18332800-18333200	Enhancers	Ovary	ovary
10	chr10:18332800-18333200	Weak transcription	Hela-S3	cervix
11	chr10:18332800-18333400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr10:18332800-18333800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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