Variant report
| Variant | rs73617133 |
|---|---|
| Chromosome Location | chr13:93154075-93154076 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:93142214..93145104-chr13:93152778..93154703,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000263741 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs59816585 | 1.00[AMR][1000 genomes] |
| rs73621519 | 1.00[AMR][1000 genomes] |
| rs73621524 | 1.00[AMR][1000 genomes] |
| rs73621527 | 1.00[AMR][1000 genomes] |
| rs73621532 | 1.00[AMR][1000 genomes] |
| rs73621541 | 1.00[AMR][1000 genomes] |
| rs73621542 | 1.00[AMR][1000 genomes] |
| rs73621550 | 1.00[AMR][1000 genomes] |
| rs73632249 | 1.00[AMR][1000 genomes] |
| rs73632255 | 1.00[AMR][1000 genomes] |
| rs73632257 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832680 | chr13:93021114-93181489 | Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv471168 | chr13:93138577-93208593 | Enhancers Weak transcription Genic enhancers ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNAmiRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv900904 | chr13:93138577-93208593 | Enhancers Weak transcription ZNF genes & repeats Genic enhancers | TF binding regionChromatin interactive regionlncRNAmiRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv900905 | chr13:93138577-93211339 | Enhancers Weak transcription Genic enhancers ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNAmiRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv562728 | chr13:93142706-93208593 | Weak transcription Enhancers Genic enhancers ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:93153000-93160200 | Weak transcription | ES-WA7 Cell Line | embryonic stem cell |
