Variant report
| Variant | rs73632257 |
|---|---|
| Chromosome Location | chr13:93137785-93137786 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | ZC3H11A | chr13:93137445-93137860 | K562 | blood: | n/a | n/a |
| 2 | STAT3 | chr13:93137700-93137900 | MCF10A-Er-Src | breast: | n/a | chr13:93137821-93137829 |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:93132949..93134764-chr13:93137221..93138765,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| MIR548AS | TF binding region |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs59816585 | 1.00[AMR][1000 genomes] |
| rs73617133 | 1.00[AMR][1000 genomes] |
| rs73621519 | 1.00[AMR][1000 genomes] |
| rs73621524 | 1.00[AMR][1000 genomes] |
| rs73621527 | 1.00[AMR][1000 genomes] |
| rs73621532 | 1.00[AMR][1000 genomes] |
| rs73621541 | 1.00[AMR][1000 genomes] |
| rs73621542 | 1.00[AMR][1000 genomes] |
| rs73621550 | 1.00[AMR][1000 genomes] |
| rs73632249 | 1.00[AMR][1000 genomes] |
| rs73632255 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832680 | chr13:93021114-93181489 | Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
