Variant report

Variant	rs73617180
Chromosome Location	chr6:131254950-131254951
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131252764..131256680-chr6:131257995..131261585,5	K562	blood:
2	chr6:131250056..131252912-chr6:131253561..131255639,2	MCF-7	breast:

rs_ID	r²[population]
rs1888958	0.83[AFR][1000 genomes]
rs2327004	0.80[AFR][1000 genomes]
rs73617136	0.95[AFR][1000 genomes]
rs73617149	0.83[AFR][1000 genomes]
rs73617159	1.00[AFR][1000 genomes]
rs73617166	1.00[AFR][1000 genomes]
rs73623312	0.80[AFR][1000 genomes]
rs73631018	0.95[AFR][1000 genomes]
rs73631094	0.95[AFR][1000 genomes]

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131220600-131281200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:131234800-131266600	Weak transcription	GM12878-XiMat	blood
3	chr6:131242800-131255000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:131244200-131279000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:131244800-131255000	Weak transcription	Lung	lung
6	chr6:131246200-131264800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:131248800-131255000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr6:131249000-131259000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:131249200-131255000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:131249800-131255000	Weak transcription	Small Intestine	intestine
11	chr6:131250800-131255000	Weak transcription	NH-A	brain
12	chr6:131250800-131255600	Weak transcription	Pancreas	Pancrea
13	chr6:131251000-131255000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr6:131251200-131255000	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr6:131251200-131268200	Weak transcription	Right Atrium	heart
16	chr6:131251800-131256200	Weak transcription	Aorta	Aorta
17	chr6:131253000-131272800	Weak transcription	Dnd41	blood
18	chr6:131253000-131302200	Weak transcription	Primary B cells from cord blood	blood
19	chr6:131253400-131255000	Enhancers	Brain Substantia Nigra	brain
20	chr6:131253400-131256200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:131253600-131255200	Enhancers	Brain Angular Gyrus	brain
22	chr6:131253600-131255200	Enhancers	Fetal Lung	lung
23	chr6:131253600-131257000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:131253600-131257400	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr6:131253600-131257400	Enhancers	Adipose Nuclei	Adipose
26	chr6:131253800-131255000	Enhancers	NHDF-Ad	bronchial
27	chr6:131253800-131255400	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr6:131253800-131255400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:131253800-131255800	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr6:131253800-131255800	Enhancers	Psoas Muscle	Psoas
31	chr6:131253800-131256000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr6:131253800-131256600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr6:131253800-131256600	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr6:131253800-131257200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr6:131253800-131257600	Enhancers	Osteobl	bone
36	chr6:131254000-131255200	Enhancers	H9 Cell Line	embryonic stem cell
37	chr6:131254000-131255200	Enhancers	Colon Smooth Muscle	Colon
38	chr6:131254000-131255400	Enhancers	Ovary	ovary
39	chr6:131254000-131255600	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr6:131254000-131255800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr6:131254000-131255800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr6:131254000-131257200	Enhancers	Fetal Muscle Leg	muscle
43	chr6:131254000-131258200	Enhancers	NHLF	lung
44	chr6:131254200-131255000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr6:131254200-131255200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr6:131254200-131255200	Enhancers	Sigmoid Colon	Sigmoid Colon
47	chr6:131254200-131255400	Enhancers	iPS-15b Cell Line	embryonic stem cell
48	chr6:131254200-131255400	Enhancers	Fetal Intestine Large	intestine
49	chr6:131254200-131255400	Enhancers	Rectal Smooth Muscle	rectum
50	chr6:131254200-131255800	Enhancers	Fetal Intestine Small	intestine

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