Variant report

Variant	rs73617694
Chromosome Location	chr6:150716612-150716613
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11963823	0.90[AFR][1000 genomes]
rs57376755	0.82[AFR][1000 genomes]
rs59354427	1.00[AFR][1000 genomes]
rs73617636	0.89[AFR][1000 genomes]
rs73617652	0.93[AFR][1000 genomes]
rs73617672	0.90[AFR][1000 genomes]
rs73617673	0.90[AFR][1000 genomes]
rs73617678	0.90[AFR][1000 genomes]
rs73617682	0.90[AFR][1000 genomes]
rs73617699	0.86[AFR][1000 genomes]
rs73619503	0.96[AFR][1000 genomes]
rs73619510	0.96[AFR][1000 genomes]
rs73619523	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763602	chr6:150581193-150720666	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150712200-150719200	Weak transcription	Fetal Intestine Small	intestine
2	chr6:150715000-150716800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:150715400-150717000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:150716400-150717000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:150716400-150718200	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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