Variant report

Variant	rs73624813
Chromosome Location	chr19:37675610-37675611
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs1234287	0.91[ASN][1000 genomes]
rs12459805	0.91[ASN][1000 genomes]
rs12459844	0.91[ASN][1000 genomes]
rs12460043	1.00[ASN][1000 genomes]
rs12460087	1.00[ASN][1000 genomes]
rs12460098	0.91[ASN][1000 genomes]
rs12460285	0.91[ASN][1000 genomes]
rs12460291	0.91[ASN][1000 genomes]
rs12460498	0.92[ASN][1000 genomes]
rs12460556	1.00[ASN][1000 genomes]
rs12460557	1.00[ASN][1000 genomes]
rs12460577	1.00[ASN][1000 genomes]
rs12460798	0.91[ASN][1000 genomes]
rs12460800	0.91[ASN][1000 genomes]
rs12460802	0.91[ASN][1000 genomes]
rs12460821	0.91[ASN][1000 genomes]
rs12461358	0.82[ASN][1000 genomes]
rs12461446	0.91[ASN][1000 genomes]
rs12461501	0.91[ASN][1000 genomes]
rs12461563	0.91[ASN][1000 genomes]
rs12461933	0.91[ASN][1000 genomes]
rs12462186	1.00[ASN][1000 genomes]
rs12462205	0.91[ASN][1000 genomes]
rs12462276	0.91[ASN][1000 genomes]
rs12462623	0.91[ASN][1000 genomes]
rs12462629	0.91[ASN][1000 genomes]
rs12463101	0.91[ASN][1000 genomes]
rs12463103	0.91[ASN][1000 genomes]
rs12463125	0.80[ASN][1000 genomes]
rs12463280	0.91[ASN][1000 genomes]
rs12463328	0.87[ASN][1000 genomes]
rs1521096	0.91[ASN][1000 genomes]
rs1521097	0.91[ASN][1000 genomes]
rs1521098	0.91[ASN][1000 genomes]
rs1521099	1.00[ASN][1000 genomes]
rs17239026	0.91[ASN][1000 genomes]
rs17304758	0.91[ASN][1000 genomes]
rs3213840	0.91[ASN][1000 genomes]
rs34191527	1.00[ASN][1000 genomes]
rs34994400	0.91[ASN][1000 genomes]
rs35314047	0.91[ASN][1000 genomes]
rs35374722	0.91[ASN][1000 genomes]
rs35692141	0.91[ASN][1000 genomes]
rs36023046	0.91[ASN][1000 genomes]
rs4358055	1.00[ASN][1000 genomes]
rs56717658	0.87[ASN][1000 genomes]
rs57057279	1.00[ASN][1000 genomes]
rs57505463	1.00[ASN][1000 genomes]
rs58017177	1.00[ASN][1000 genomes]
rs59044151	1.00[ASN][1000 genomes]
rs59397049	1.00[ASN][1000 genomes]
rs60479919	1.00[ASN][1000 genomes]
rs61056688	0.88[ASN][1000 genomes]
rs61371510	1.00[ASN][1000 genomes]
rs73618072	0.87[ASN][1000 genomes]
rs73618081	0.91[ASN][1000 genomes]
rs73618082	0.91[ASN][1000 genomes]
rs73618086	0.91[ASN][1000 genomes]
rs73618088	0.91[ASN][1000 genomes]
rs73618098	0.91[ASN][1000 genomes]
rs73620807	0.91[ASN][1000 genomes]
rs73620810	0.91[ASN][1000 genomes]
rs73620811	0.91[ASN][1000 genomes]
rs73620813	0.91[ASN][1000 genomes]
rs73620816	0.91[ASN][1000 genomes]
rs73620836	1.00[ASN][1000 genomes]
rs73620839	1.00[ASN][1000 genomes]
rs73620840	1.00[ASN][1000 genomes]
rs73620843	1.00[ASN][1000 genomes]
rs73620852	1.00[ASN][1000 genomes]
rs73620854	1.00[ASN][1000 genomes]
rs73620860	0.95[ASN][1000 genomes]
rs73620862	1.00[ASN][1000 genomes]
rs73620866	1.00[ASN][1000 genomes]
rs73620870	1.00[ASN][1000 genomes]
rs73625272	0.91[ASN][1000 genomes]
rs73626558	0.91[ASN][1000 genomes]
rs73626564	0.91[ASN][1000 genomes]
rs73626588	0.91[ASN][1000 genomes]
rs73626597	0.91[ASN][1000 genomes]
rs73626600	0.91[ASN][1000 genomes]
rs8113719	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	esv3497360	chr19:37290273-37745365	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
8	esv3497361	chr19:37290273-37745365	Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	nsv458568	chr19:37325826-37747108	Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
10	nsv579461	chr19:37325826-37747108	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
11	nsv911652	chr19:37437106-37774299	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
12	nsv911654	chr19:37487632-37758082	Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
13	esv3433517	chr19:37643755-37675928	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv911655	chr19:37646745-37758082	ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37668000-37686000	ZNF genes & repeats	Liver	Liver
2	chr19:37670000-37681200	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr19:37672000-37676000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr19:37672000-37686400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
5	chr19:37672200-37676000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr19:37672200-37686000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr19:37672800-37676000	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
8	chr19:37672800-37676200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
9	chr19:37672800-37686000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr19:37673000-37675800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr19:37673000-37675800	ZNF genes & repeats	Fetal Brain Female	brain
12	chr19:37673200-37675800	ZNF genes & repeats	Brain Germinal Matrix	brain
13	chr19:37673200-37679000	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
14	chr19:37673200-37690600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
15	chr19:37673400-37675800	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr19:37673400-37676000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr19:37673400-37685400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr19:37673600-37675800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
19	chr19:37673800-37685600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr19:37674000-37677000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr19:37674000-37677000	Weak transcription	Brain Angular Gyrus	brain
22	chr19:37674000-37677200	Weak transcription	Gastric	stomach
23	chr19:37674200-37675800	ZNF genes & repeats	Right Ventricle	heart
24	chr19:37674400-37677000	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr19:37674400-37677000	Weak transcription	Fetal Kidney	kidney
26	chr19:37674600-37676600	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr19:37674800-37677600	Weak transcription	HSMM	muscle
28	chr19:37675000-37677000	Weak transcription	Brain Anterior Caudate	brain
29	chr19:37675000-37677000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr19:37675000-37701000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr19:37675200-37677000	Weak transcription	Fetal Muscle Trunk	muscle
32	chr19:37675200-37677000	Weak transcription	Placenta	Placenta
33	chr19:37675200-37677000	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr19:37675200-37677200	Weak transcription	Pancreas	Pancrea
35	chr19:37675200-37680400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr19:37675400-37675800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
37	chr19:37675400-37675800	ZNF genes & repeats	Stomach Smooth Muscle	stomach
38	chr19:37675400-37676000	ZNF genes & repeats	Fetal Lung	lung
39	chr19:37675400-37677000	Weak transcription	Fetal Thymus	thymus
40	chr19:37675600-37675800	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr19:37675600-37675800	ZNF genes & repeats	Fetal Heart	heart
42	chr19:37675600-37677000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr19:37675600-37677000	Weak transcription	Ovary	ovary
44	chr19:37675600-37678600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

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