Variant report

Variant	rs73626551
Chromosome Location	chr11:104564801-104564802
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs58429690	0.82[AFR][1000 genomes]
rs61078356	0.93[AFR][1000 genomes]
rs73618095	0.93[AFR][1000 genomes]
rs73620833	0.86[AFR][1000 genomes]
rs73625263	0.81[AFR][1000 genomes]
rs73625267	0.84[AFR][1000 genomes]
rs73625269	0.81[AFR][1000 genomes]
rs73625270	0.87[AFR][1000 genomes]
rs73625274	0.93[AFR][1000 genomes]
rs73625278	0.93[AFR][1000 genomes]
rs73625280	0.93[AFR][1000 genomes]
rs73625282	0.93[AFR][1000 genomes]
rs73626587	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044271	chr11:104136156-104666252	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1046098	chr11:104207210-105003661	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1054456	chr11:104358924-104805251	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv832254	chr11:104412769-104607277	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv2761706	chr11:104523335-104634024	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1050346	chr11:104548749-104664665	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104559600-104565000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr11:104559800-104565000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr11:104559800-104565200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr11:104561000-104565000	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr11:104561600-104565200	Weak transcription	NHDF-Ad	bronchial
6	chr11:104562400-104565200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:104563800-104566400	Enhancers	Hela-S3	cervix
8	chr11:104564600-104565400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:104564600-104566200	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr11:104564800-104566000	Enhancers	NHLF	lung
11	chr11:104564800-104566400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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