Variant report

Variant	rs73626587
Chromosome Location	chr11:104577049-104577050
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs61078356	1.00[AFR][1000 genomes]
rs73618095	1.00[AFR][1000 genomes]
rs73620830	0.82[AFR][1000 genomes]
rs73620833	0.93[AFR][1000 genomes]
rs73620838	0.82[AFR][1000 genomes]
rs73625251	0.85[AFR][1000 genomes]
rs73625259	0.85[AFR][1000 genomes]
rs73625263	0.87[AFR][1000 genomes]
rs73625269	0.87[AFR][1000 genomes]
rs73625270	0.93[AFR][1000 genomes]
rs73625274	1.00[AFR][1000 genomes]
rs73625278	1.00[AFR][1000 genomes]
rs73625280	1.00[AFR][1000 genomes]
rs73625282	1.00[AFR][1000 genomes]
rs73626551	0.93[AFR][1000 genomes]
rs7924860	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044271	chr11:104136156-104666252	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1046098	chr11:104207210-105003661	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1054456	chr11:104358924-104805251	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv832254	chr11:104412769-104607277	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv2761706	chr11:104523335-104634024	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1050346	chr11:104548749-104664665	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104575400-104577400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
2	chr11:104575600-104577200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
3	chr11:104575800-104577200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:104575800-104577200	Flanking Active TSS	Primary T cells from cord blood	blood
5	chr11:104576200-104577200	Active TSS	Primary T cells fromperipheralblood	blood
6	chr11:104576200-104577200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr11:104576200-104577200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr11:104576200-104577200	Enhancers	Fetal Lung	lung
9	chr11:104576200-104577200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr11:104576200-104577600	Flanking Active TSS	Primary hematopoietic stem cells	blood
11	chr11:104576200-104577600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr11:104576400-104577200	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr11:104576400-104578800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr11:104576600-104580400	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr11:104576600-104580600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr11:104576800-104577200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
17	chr11:104576800-104577200	Enhancers	Rectal Mucosa Donor 29	rectum
18	chr11:104576800-104577600	Enhancers	GM12878-XiMat	blood
19	chr11:104576800-104577600	Enhancers	HUVEC	blood vessel
20	chr11:104576800-104577800	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr11:104576800-104577800	Enhancers	Primary B cells from peripheral blood	blood
22	chr11:104576800-104579000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr11:104576800-104579000	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr11:104577000-104577200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr11:104577000-104577400	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr11:104577000-104577400	Enhancers	Dnd41	blood
27	chr11:104577000-104577600	Enhancers	Primary B cells from cord blood	blood
28	chr11:104577000-104577600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
29	chr11:104577000-104577600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr11:104577000-104577800	Enhancers	Primary neutrophils fromperipheralblood	blood
31	chr11:104577000-104577800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
32	chr11:104577000-104579000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
33	chr11:104577000-104579000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr11:104577000-104580400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
35	chr11:104577000-104580400	Weak transcription	NHLF	lung

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