Variant report

Variant	rs73639896
Chromosome Location	chr9:3457464-3457465
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:3453765..3455686-chr9:3457220..3458884,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs7022489	1.00[EUR][1000 genomes]
rs7042511	1.00[EUR][1000 genomes]
rs73639894	1.00[EUR][1000 genomes]
rs73639895	1.00[EUR][1000 genomes]
rs7849415	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032921	chr9:3139007-3502815	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv539940	chr9:3139007-3502815	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv531566	chr9:3288211-3545454	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
4	nsv892089	chr9:3290569-3578094	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv916259	chr9:3308176-4296711	Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
6	nsv1034280	chr9:3319718-3491987	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv539942	chr9:3319718-3491987	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1028815	chr9:3319718-3584455	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
9	nsv892090	chr9:3391364-3496660	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1019324	chr9:3436845-3502815	ZNF genes & repeats Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv1022795	chr9:3436845-3744623	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:3432400-3467800	Weak transcription	GM12878-XiMat	blood
2	chr9:3432600-3460600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr9:3435000-3473200	Weak transcription	Primary T cells from cord blood	blood
4	chr9:3438400-3472800	Weak transcription	Primary B cells from cord blood	blood
5	chr9:3447400-3478800	Weak transcription	Aorta	Aorta
6	chr9:3448000-3475800	Weak transcription	Fetal Intestine Small	intestine
7	chr9:3448800-3458800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr9:3452200-3464200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr9:3453400-3459000	Weak transcription	Colon Smooth Muscle	Colon
10	chr9:3455000-3483000	Weak transcription	Fetal Thymus	thymus
11	chr9:3455800-3458600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr9:3456000-3460000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:3456200-3458000	Weak transcription	Fetal Brain Female	brain
14	chr9:3456200-3459000	Weak transcription	Brain Substantia Nigra	brain
15	chr9:3456200-3459200	Weak transcription	Brain Angular Gyrus	brain
16	chr9:3456200-3467600	Weak transcription	Ovary	ovary
17	chr9:3456200-3473200	Weak transcription	Primary hematopoietic stem cells	blood
18	chr9:3456400-3458000	Weak transcription	Fetal Lung	lung
19	chr9:3456400-3458400	Weak transcription	Fetal Heart	heart
20	chr9:3456400-3458600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr9:3456400-3459000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr9:3456400-3459000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr9:3457200-3458000	Enhancers	A549	lung

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