Variant report

Variant	rs73643129
Chromosome Location	chr9:27028382-27028383
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs55921416	1.00[AMR][1000 genomes]
rs56154836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56675714	1.00[AMR][1000 genomes]
rs6475953	1.00[AMR][1000 genomes]
rs7025174	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7026226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73643113	1.00[AMR][1000 genomes]
rs73643118	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73643121	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73643123	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73643124	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73643126	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73643127	1.00[AMR][1000 genomes]
rs73643128	0.87[AFR][1000 genomes]
rs73643130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73643134	1.00[AMR][1000 genomes]
rs73643135	1.00[AMR][1000 genomes]
rs73643136	1.00[AMR][1000 genomes]
rs73643137	1.00[AMR][1000 genomes]
rs73643140	1.00[AMR][1000 genomes]
rs7856475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7857472	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528614	chr9:26893662-27074233	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv517269	chr9:26945976-27137242	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv892862	chr9:26956663-27190655	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	esv3427395	chr9:27025338-27040548	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26957200-27040000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr9:26985200-27063800	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr9:26991800-27058000	Weak transcription	NHDF-Ad	bronchial
4	chr9:27009800-27070000	Weak transcription	Psoas Muscle	Psoas
5	chr9:27011200-27037400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr9:27012000-27048800	Weak transcription	HepG2	liver
7	chr9:27014400-27060800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr9:27014400-27068200	Weak transcription	Fetal Heart	heart
9	chr9:27018400-27065200	Weak transcription	Osteobl	bone
10	chr9:27018600-27029400	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr9:27019200-27061800	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr9:27022600-27036200	Weak transcription	NHEK	skin
13	chr9:27024000-27028400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr9:27024400-27028600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr9:27024400-27029400	Weak transcription	Esophagus	oesophagus
16	chr9:27024400-27047200	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr9:27024400-27053800	Weak transcription	Lung	lung
18	chr9:27024400-27082600	Weak transcription	Gastric	stomach
19	chr9:27024600-27029400	Weak transcription	Ovary	ovary
20	chr9:27024600-27031800	Weak transcription	Small Intestine	intestine
21	chr9:27024600-27036200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr9:27024600-27036400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr9:27024600-27037400	Weak transcription	Stomach Smooth Muscle	stomach
24	chr9:27024600-27037600	Weak transcription	HSMMtube	muscle
25	chr9:27024600-27044800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr9:27024600-27048600	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr9:27024600-27048800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr9:27024600-27049200	Weak transcription	Colon Smooth Muscle	Colon
29	chr9:27024600-27053400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr9:27024600-27054400	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr9:27024600-27056400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr9:27024600-27058800	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr9:27024600-27059600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr9:27024600-27061000	Weak transcription	Dnd41	blood
35	chr9:27024600-27061400	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr9:27024600-27061800	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr9:27024600-27064400	Weak transcription	Colonic Mucosa	Colon
38	chr9:27024600-27075800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr9:27024600-27078600	Weak transcription	Aorta	Aorta
40	chr9:27024600-27079000	Weak transcription	Pancreas	Pancrea
41	chr9:27024600-27082400	Weak transcription	Primary T cells from cord blood	blood
42	chr9:27024600-27083400	Weak transcription	Left Ventricle	heart
43	chr9:27024600-27085000	Weak transcription	Brain Cingulate Gyrus	brain
44	chr9:27024600-27086800	Weak transcription	Right Ventricle	heart
45	chr9:27024800-27028400	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr9:27024800-27029000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr9:27024800-27029400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr9:27024800-27029800	Weak transcription	Brain Germinal Matrix	brain
49	chr9:27024800-27031200	Weak transcription	Rectal Smooth Muscle	rectum
50	chr9:27024800-27031600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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