Variant report

Variant	rs73643144
Chromosome Location	chr9:27126452-27126453
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12001452	0.85[AMR][1000 genomes]
rs12003475	0.85[AMR][1000 genomes]
rs12005349	0.85[AMR][1000 genomes]
rs6475967	0.85[AMR][1000 genomes]
rs7023989	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7029406	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7042136	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73425117	0.85[AMR][1000 genomes]
rs73643153	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73643154	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517269	chr9:26945976-27137242	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv892862	chr9:26956663-27190655	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1016733	chr9:27073650-27264576	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1022313	chr9:27083369-27250505	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1017802	chr9:27088160-27262682	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1019104	chr9:27088160-27358206	Enhancers Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv613945	chr9:27121906-27148475	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:27122800-27127200	Enhancers	Fetal Muscle Leg	muscle
2	chr9:27122800-27150800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:27123000-27127200	Enhancers	Fetal Stomach	stomach
4	chr9:27123200-27127000	Enhancers	Osteobl	bone
5	chr9:27123600-27129400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr9:27123800-27127400	Enhancers	Fetal Lung	lung
7	chr9:27124000-27127000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:27124000-27127000	Enhancers	NHLF	lung
9	chr9:27124200-27126600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr9:27124200-27126600	Enhancers	HSMM	muscle
11	chr9:27124200-27126800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr9:27124200-27126800	Enhancers	HMEC	breast
13	chr9:27124200-27127000	Enhancers	Colon Smooth Muscle	Colon
14	chr9:27124400-27126800	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr9:27124400-27126800	Enhancers	A549	lung
16	chr9:27124400-27127000	Enhancers	Ovary	ovary
17	chr9:27124400-27127200	Enhancers	Rectal Smooth Muscle	rectum
18	chr9:27124600-27126800	Enhancers	Stomach Smooth Muscle	stomach
19	chr9:27124600-27129000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr9:27125200-27126800	Weak transcription	Fetal Muscle Trunk	muscle
21	chr9:27125200-27126800	Enhancers	NHEK	skin
22	chr9:27125200-27127000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr9:27125200-27133200	Weak transcription	Psoas Muscle	Psoas
24	chr9:27125400-27129400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr9:27125600-27126600	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr9:27125600-27126800	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr9:27125600-27129000	Weak transcription	Adipose Nuclei	Adipose
28	chr9:27126000-27126800	Enhancers	Rectal Mucosa Donor 29	rectum
29	chr9:27126200-27127200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr9:27126200-27129000	Weak transcription	HUVEC	blood vessel

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