Variant report

Variant	rs73643154
Chromosome Location	chr9:27145458-27145459
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12001452	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12003475	0.85[AMR][1000 genomes]
rs12005349	0.85[AMR][1000 genomes]
rs12351513	0.81[AFR][1000 genomes]
rs6475967	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7023989	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7029406	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7042136	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73425117	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73643144	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73643153	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892862	chr9:26956663-27190655	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1016733	chr9:27073650-27264576	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1022313	chr9:27083369-27250505	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1017802	chr9:27088160-27262682	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1019104	chr9:27088160-27358206	Enhancers Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv613945	chr9:27121906-27148475	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv892863	chr9:27138898-27170934	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:27122800-27150800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:27143200-27150000	Weak transcription	Right Atrium	heart
3	chr9:27143800-27150200	Weak transcription	Fetal Lung	lung
4	chr9:27144000-27149800	Weak transcription	Lung	lung
5	chr9:27144400-27145600	Enhancers	HUVEC	blood vessel
6	chr9:27144400-27145800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr9:27144800-27145600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr9:27144800-27145600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr9:27145000-27145600	Enhancers	Adipose Nuclei	Adipose
10	chr9:27145000-27149600	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr9:27145200-27145600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr9:27145200-27145600	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr9:27145200-27145800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:27145200-27149400	Weak transcription	Fetal Stomach	stomach
15	chr9:27145400-27149600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:27145400-27149600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr9:27145400-27149600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr9:27145400-27149600	Weak transcription	Colon Smooth Muscle	Colon
19	chr9:27145400-27149600	Weak transcription	Left Ventricle	heart
20	chr9:27145400-27149600	Weak transcription	Rectal Smooth Muscle	rectum
21	chr9:27145400-27149600	Weak transcription	Spleen	Spleen
22	chr9:27145400-27150200	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr9:27145400-27150200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr9:27145400-27150200	Weak transcription	Fetal Muscle Leg	muscle
25	chr9:27145400-27150400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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