Variant report

Variant	rs73646206
Chromosome Location	chr9:16724414-16724415
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10962552	0.80[AFR][1000 genomes]
rs57760617	1.00[AMR][1000 genomes]
rs60191165	1.00[AMR][1000 genomes]
rs7047761	1.00[AMR][1000 genomes]
rs73646205	0.82[AFR][1000 genomes]
rs73649044	1.00[AMR][1000 genomes]
rs73649048	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	esv2758627	chr9:16641966-16809203	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv2759673	chr9:16641966-16809203	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv892649	chr9:16677221-16761597	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv892650	chr9:16696187-16950860	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16709000-16726000	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr9:16709600-16725800	Weak transcription	Fetal Stomach	stomach
3	chr9:16711400-16726600	Weak transcription	Psoas Muscle	Psoas
4	chr9:16713200-16725800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr9:16713200-16726600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:16719200-16725400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr9:16719200-16726000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr9:16720200-16726000	Weak transcription	Fetal Muscle Leg	muscle
9	chr9:16720400-16724600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr9:16720400-16725400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr9:16720600-16725400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr9:16721400-16725000	Weak transcription	Hela-S3	cervix
13	chr9:16721600-16726800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr9:16722200-16726000	Weak transcription	Right Atrium	heart
15	chr9:16722400-16725000	Weak transcription	HUVEC	blood vessel
16	chr9:16722400-16725600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr9:16722400-16725600	Weak transcription	NH-A	brain
18	chr9:16722400-16725800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr9:16722400-16725800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr9:16722400-16725800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr9:16722400-16725800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr9:16722400-16725800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr9:16722400-16725800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr9:16722400-16725800	Weak transcription	HSMMtube	muscle
25	chr9:16722400-16726000	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr9:16722400-16726000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr9:16722400-16726000	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr9:16722400-16726000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr9:16722400-16726000	Weak transcription	Adipose Nuclei	Adipose
30	chr9:16722400-16726000	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr9:16722400-16726600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr9:16722800-16725200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr9:16722800-16725600	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr9:16722800-16725800	Weak transcription	HSMM	muscle
35	chr9:16723200-16725000	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr9:16723200-16726000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr9:16723400-16725200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr9:16723800-16725800	Enhancers	Muscle Satellite Cultured Cells	--
39	chr9:16723800-16725800	Enhancers	Osteobl	bone
40	chr9:16724000-16724600	Enhancers	NHDF-Ad	bronchial
41	chr9:16724000-16725800	Enhancers	A549	lung
42	chr9:16724200-16724600	Enhancers	Colon Smooth Muscle	Colon
43	chr9:16724200-16725200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr9:16724200-16725400	Weak transcription	NHLF	lung
45	chr9:16724200-16725800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr9:16724400-16725800	Enhancers	Rectal Smooth Muscle	rectum
47	chr9:16724400-16729800	Active TSS	Ovary	ovary

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