Variant report

Variant	rs73646775
Chromosome Location	chr9:71487546-71487547
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:71483920..71486082-chr9:71487169..71489754,2	K562	blood:
2	chr9:71333441..71335989-chr9:71487302..71489155,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1107109	1.00[EUR][1000 genomes]
rs17057813	1.00[EUR][1000 genomes]
rs17058128	1.00[EUR][1000 genomes]
rs56017605	1.00[EUR][1000 genomes]
rs56173513	1.00[EUR][1000 genomes]
rs56822677	1.00[EUR][1000 genomes]
rs56885985	1.00[EUR][1000 genomes]
rs57442310	1.00[EUR][1000 genomes]
rs58120494	1.00[EUR][1000 genomes]
rs58282494	1.00[EUR][1000 genomes]
rs58870473	1.00[EUR][1000 genomes]
rs59646983	1.00[EUR][1000 genomes]
rs60175722	1.00[EUR][1000 genomes]
rs7048378	1.00[EUR][1000 genomes]
rs73646711	1.00[EUR][1000 genomes]
rs73646712	1.00[EUR][1000 genomes]
rs73646713	1.00[EUR][1000 genomes]
rs73646714	1.00[EUR][1000 genomes]
rs73646754	1.00[EUR][1000 genomes]
rs73646755	1.00[EUR][1000 genomes]
rs73646756	1.00[EUR][1000 genomes]
rs73646758	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032210	chr9:71130848-71511987	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv2422258	chr9:71234845-71663340	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1017903	chr9:71276951-71690579	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1051723	chr9:71398713-71971285	Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv1053402	chr9:71399722-71819949	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
6	nsv540146	chr9:71399722-71819949	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
7	nsv1043689	chr9:71399922-71800338	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
8	nsv540147	chr9:71399922-71800338	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
9	nsv1047540	chr9:71401918-71803639	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
10	nsv931684	chr9:71417110-71957723	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
11	nsv1049175	chr9:71418242-71986910	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
12	nsv466393	chr9:71453443-71704827	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	nsv614547	chr9:71453443-71704827	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
14	nsv1035823	chr9:71465139-71901672	Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
15	nsv466396	chr9:71471912-71935577	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
16	nsv614548	chr9:71471912-71935577	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71438000-71491200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr9:71459000-71519200	Weak transcription	Colonic Mucosa	Colon
3	chr9:71460400-71495600	Weak transcription	Aorta	Aorta
4	chr9:71460800-71517000	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr9:71463400-71492800	Weak transcription	GM12878-XiMat	blood
6	chr9:71463600-71501800	Weak transcription	Small Intestine	intestine
7	chr9:71467800-71495800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr9:71474600-71492400	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr9:71474800-71501800	Weak transcription	Right Ventricle	heart
10	chr9:71479200-71501600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr9:71480800-71495600	Weak transcription	Lung	lung
12	chr9:71480800-71495600	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr9:71480800-71501200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr9:71481200-71504000	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr9:71482000-71492600	Weak transcription	Fetal Intestine Large	intestine
16	chr9:71482400-71495200	Weak transcription	Fetal Intestine Small	intestine
17	chr9:71484000-71488000	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr9:71484400-71495200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr9:71485600-71488000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr9:71485800-71491200	Weak transcription	Rectal Smooth Muscle	rectum
21	chr9:71485800-71492600	Weak transcription	Duodenum Mucosa	Duodenum
22	chr9:71486000-71491000	Weak transcription	Primary B cells from cord blood	blood
23	chr9:71486200-71488200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr9:71486400-71488000	Enhancers	Fetal Heart	heart
25	chr9:71486400-71491200	Weak transcription	Primary B cells from peripheral blood	blood
26	chr9:71486400-71495400	Weak transcription	HepG2	liver
27	chr9:71486600-71488000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr9:71486600-71488000	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr9:71486800-71488000	Enhancers	Brain Germinal Matrix	brain
30	chr9:71487000-71487600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr9:71487000-71487600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr9:71487000-71487800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr9:71487000-71487800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr9:71487000-71487800	Enhancers	Brain Hippocampus Middle	brain
35	chr9:71487000-71487800	Enhancers	Fetal Brain Female	brain
36	chr9:71487000-71488000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
37	chr9:71487000-71488000	Enhancers	Fetal Kidney	kidney
38	chr9:71487000-71489000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr9:71487200-71487600	Active TSS	ES-I3 Cell Line	embryonic stem cell
40	chr9:71487200-71487600	Active TSS	HUES6 Cell Line	embryonic stem cell
41	chr9:71487200-71487600	Active TSS	iPS-15b Cell Line	embryonic stem cell
42	chr9:71487200-71487600	Weak transcription	Brain Cingulate Gyrus	brain
43	chr9:71487200-71491200	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr9:71487200-71491200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr9:71487400-71487600	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr9:71487400-71487600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr9:71487400-71487800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
48	chr9:71487400-71487800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
49	chr9:71487400-71487800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
50	chr9:71487400-71487800	Enhancers	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links