Variant report

Variant	rs73653629
Chromosome Location	chr9:97418587-97418588
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97401282..97403980-chr9:97418251..97421085,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165140	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73653636	0.81[AFR][1000 genomes]
rs73653637	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv893597	chr9:97380597-97463435	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97402400-97420000	Weak transcription	Right Atrium	heart
2	chr9:97416800-97418600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr9:97417800-97418600	Flanking Bivalent TSS/Enh	Dnd41	blood
4	chr9:97417800-97419000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:97417800-97419200	Enhancers	Primary hematopoietic stem cells	blood
6	chr9:97417800-97419200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr9:97417800-97419200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr9:97417800-97419800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr9:97418000-97418600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
10	chr9:97418000-97418600	Active TSS	Osteobl	bone
11	chr9:97418000-97418800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
12	chr9:97418000-97418800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
13	chr9:97418000-97419000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
14	chr9:97418000-97419000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:97418000-97419000	Active TSS	Duodenum Mucosa	Duodenum
16	chr9:97418000-97419000	Active TSS	Rectal Mucosa Donor 29	rectum
17	chr9:97418000-97419200	Flanking Active TSS	Primary B cells from cord blood	blood
18	chr9:97418000-97419200	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr9:97418000-97419200	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr9:97418000-97419200	Flanking Active TSS	GM12878-XiMat	blood
21	chr9:97418000-97419800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr9:97418000-97419800	Enhancers	H9 Cell Line	embryonic stem cell
23	chr9:97418200-97418600	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr9:97418200-97418600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr9:97418200-97418600	Active TSS	Breast Myoepithelial Primary Cells	Breast
26	chr9:97418200-97418600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
27	chr9:97418200-97418600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr9:97418200-97418600	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
29	chr9:97418200-97418600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr9:97418200-97418600	Active TSS	Primary T killer memory cells from peripheral blood	blood
31	chr9:97418200-97418600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr9:97418200-97418600	Active TSS	Adipose Nuclei	Adipose
33	chr9:97418200-97418600	Active TSS	Colonic Mucosa	Colon
34	chr9:97418200-97418600	Flanking Active TSS	Fetal Muscle Trunk	muscle
35	chr9:97418200-97418600	Flanking Active TSS	Fetal Muscle Leg	muscle
36	chr9:97418200-97418600	Active TSS	Placenta	Placenta
37	chr9:97418200-97418600	Active TSS	Ovary	ovary
38	chr9:97418200-97418600	Active TSS	Rectal Smooth Muscle	rectum
39	chr9:97418200-97418600	Active TSS	Skeletal Muscle Female	skeletal muscle
40	chr9:97418200-97418800	Flanking Active TSS	Primary B cells from peripheral blood	blood
41	chr9:97418200-97418800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
42	chr9:97418200-97418800	Active TSS	Primary T helper cells PMA-I stimulated	--
43	chr9:97418200-97418800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
44	chr9:97418200-97418800	Active TSS	Aorta	Aorta
45	chr9:97418200-97418800	Enhancers	Gastric	stomach
46	chr9:97418200-97418800	Flanking Active TSS	HSMMtube	muscle
47	chr9:97418200-97419000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr9:97418200-97419000	Flanking Active TSS	Primary T cells from cord blood	blood
49	chr9:97418200-97419000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
50	chr9:97418200-97419000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood

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