Variant report

Variant	rs73653636
Chromosome Location	chr9:97437809-97437810
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs73653629	0.81[AFR][1000 genomes]
rs73653632	0.83[AFR][1000 genomes]
rs73653637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73653638	0.81[AFR][1000 genomes]
rs73653639	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv893597	chr9:97380597-97463435	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97431800-97441000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:97432000-97438600	Weak transcription	Ovary	ovary
3	chr9:97432200-97449800	Weak transcription	Right Atrium	heart
4	chr9:97434400-97439000	Enhancers	NHDF-Ad	bronchial
5	chr9:97434800-97438800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr9:97435000-97438000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr9:97435000-97438800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr9:97435200-97439000	Enhancers	HSMM	muscle
9	chr9:97436600-97438200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr9:97436800-97438000	Enhancers	HMEC	breast
11	chr9:97436800-97438200	Enhancers	NHEK	skin
12	chr9:97436800-97439000	Enhancers	HSMMtube	muscle
13	chr9:97436800-97439000	Enhancers	Osteobl	bone
14	chr9:97436800-97440600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr9:97437000-97438200	Weak transcription	Fetal Muscle Trunk	muscle
16	chr9:97437000-97438200	Enhancers	Fetal Stomach	stomach
17	chr9:97437000-97438200	Enhancers	Hela-S3	cervix
18	chr9:97437000-97438200	Enhancers	HepG2	liver
19	chr9:97437000-97438400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr9:97437000-97438800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr9:97437000-97439000	Enhancers	Adipose Nuclei	Adipose
22	chr9:97437000-97441200	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr9:97437200-97438000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr9:97437200-97438000	Enhancers	Brain Anterior Caudate	brain
25	chr9:97437200-97438000	Enhancers	Fetal Kidney	kidney
26	chr9:97437200-97438000	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr9:97437200-97438200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr9:97437200-97438200	Enhancers	NH-A	brain
29	chr9:97437200-97438400	Enhancers	Fetal Muscle Leg	muscle
30	chr9:97437200-97439000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr9:97437400-97438000	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr9:97437400-97438000	Enhancers	Stomach Smooth Muscle	stomach
33	chr9:97437400-97438400	Enhancers	Fetal Lung	lung
34	chr9:97437600-97440600	Weak transcription	Aorta	Aorta
35	chr9:97437800-97438000	Enhancers	Fetal Intestine Small	intestine
36	chr9:97437800-97441800	Weak transcription	A549	lung

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