Variant report

Variant	rs73654507
Chromosome Location	chr9:97841787-97841788
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97840496..97842438-chr9:97844995..97846708,2	MCF-7	breast:
2	chr9:97831860..97833913-chr9:97840782..97843429,2	K562	blood:
3	chr9:97841541..97843172-chr9:97847391..97849131,2	MCF-7	breast:
4	chr9:97840591..97843019-chr9:97853758..97855499,2	MCF-7	breast:
5	chr9:97834530..97836565-chr9:97839818..97842096,2	MCF-7	breast:
6	chr9:97831645..97834250-chr9:97838730..97841950,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000207864	Chromatin interaction
ENSG00000207617	Chromatin interaction
ENSG00000207563	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs4647559	0.81[AFR][1000 genomes]
rs55708950	0.94[AFR][1000 genomes]
rs55838201	0.94[AFR][1000 genomes]
rs57232080	1.00[AFR][1000 genomes]
rs58038897	1.00[AFR][1000 genomes]
rs59149855	0.94[AFR][1000 genomes]
rs59274098	0.87[AFR][1000 genomes]
rs60070508	1.00[AFR][1000 genomes]
rs7032542	1.00[AFR][1000 genomes]
rs7032704	1.00[AFR][1000 genomes]
rs73654505	0.81[AFR][1000 genomes]
rs73654506	1.00[AFR][1000 genomes]
rs73654508	1.00[AFR][1000 genomes]
rs73654509	1.00[AFR][1000 genomes]
rs73654510	1.00[AFR][1000 genomes]
rs73654511	1.00[AFR][1000 genomes]
rs73654512	0.94[AFR][1000 genomes]
rs73654513	1.00[AFR][1000 genomes]
rs73654514	1.00[AFR][1000 genomes]
rs73654515	0.94[AFR][1000 genomes]
rs73654516	1.00[AFR][1000 genomes]
rs73654517	0.86[AFR][1000 genomes]
rs73654518	0.81[AFR][1000 genomes]
rs73654520	0.81[AFR][1000 genomes]
rs73654521	0.81[AFR][1000 genomes]
rs73654522	0.81[AFR][1000 genomes]
rs73654523	0.81[AFR][1000 genomes]
rs73654525	0.81[AFR][1000 genomes]
rs73654526	0.81[AFR][1000 genomes]
rs73654528	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
2	nsv1038106	chr9:97793038-97881416	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
3	nsv1038523	chr9:97797032-97923774	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
4	nsv540175	chr9:97797032-97923774	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
5	nsv831656	chr9:97831551-97989980	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97813000-97873000	Weak transcription	K562	blood
2	chr9:97820000-97854200	Weak transcription	Fetal Brain Male	brain
3	chr9:97820400-97843000	Weak transcription	Primary T cells from cord blood	blood
4	chr9:97820600-97875000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr9:97821400-97843200	Weak transcription	Fetal Brain Female	brain
6	chr9:97822800-97845400	Weak transcription	Primary B cells from cord blood	blood
7	chr9:97823600-97845000	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr9:97824800-97844600	Weak transcription	Fetal Thymus	thymus
9	chr9:97825400-97854400	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr9:97825800-97843400	Weak transcription	Thymus	Thymus
11	chr9:97825800-97852600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr9:97826000-97842800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr9:97826200-97843200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr9:97826200-97847400	Weak transcription	HUVEC	blood vessel
15	chr9:97826400-97842800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr9:97826400-97844200	Weak transcription	GM12878-XiMat	blood
17	chr9:97830600-97843200	Weak transcription	Primary hematopoietic stem cells	blood
18	chr9:97830600-97844800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr9:97835400-97845200	Weak transcription	HMEC	breast
20	chr9:97836800-97844600	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr9:97837400-97843000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr9:97837400-97843200	Enhancers	Brain Substantia Nigra	brain
23	chr9:97838000-97842000	Enhancers	Stomach Mucosa	stomach
24	chr9:97838000-97842200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr9:97838000-97842400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr9:97838000-97871200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr9:97838200-97843200	Enhancers	Brain Cingulate Gyrus	brain
28	chr9:97838400-97841800	Genic enhancers	Fetal Intestine Small	intestine
29	chr9:97838400-97842200	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr9:97838400-97842400	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr9:97838400-97842400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr9:97838400-97842400	Enhancers	Gastric	stomach
33	chr9:97838600-97842400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr9:97838600-97843200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr9:97838600-97844400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr9:97838800-97841800	Genic enhancers	Fetal Intestine Large	intestine
37	chr9:97838800-97843200	Enhancers	Brain Angular Gyrus	brain
38	chr9:97838800-97844400	Genic enhancers	Fetal Stomach	stomach
39	chr9:97839000-97842200	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr9:97839000-97842200	Genic enhancers	Placenta	Placenta
41	chr9:97839200-97841800	Enhancers	Fetal Muscle Trunk	muscle
42	chr9:97839200-97842400	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr9:97839200-97843000	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr9:97839200-97843600	Genic enhancers	Ovary	ovary
45	chr9:97839200-97844600	Enhancers	Cortex derived primary cultured neurospheres	brain
46	chr9:97839200-97845800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr9:97839600-97842400	Enhancers	Rectal Smooth Muscle	rectum
48	chr9:97839600-97842600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr9:97839600-97845800	Genic enhancers	HSMM	muscle
50	chr9:97839600-97850400	Strong transcription	HepG2	liver

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