Variant report

Variant	rs73654517
Chromosome Location	chr9:97854676-97854677
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:27)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:27 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:97540701..97545624-chr9:97851316..97856247,6	MCF-7	breast:
2	chr9:97851266..97855469-chr9:97887605..97891480,5	MCF-7	breast:
3	chr9:97812899..97815881-chr9:97854427..97857279,2	MCF-7	breast:
4	chr9:97851403..97855354-chr9:97856847..97861126,5	K562	blood:
5	chr9:97853610..97855332-chr9:97872385..97874393,2	MCF-7	breast:
6	chr9:97629078..97631329-chr9:97854502..97856532,2	MCF-7	breast:
7	chr9:97840591..97843019-chr9:97853758..97855499,2	MCF-7	breast:
8	chr9:97854621..97856479-chr9:97877579..97880119,2	MCF-7	breast:
9	chr9:97682387..97688736-chr9:97850073..97858737,16	MCF-7	breast:
10	chr9:97854598..97856829-chr9:97883315..97884818,2	MCF-7	breast:
11	chr9:97813946..97816396-chr9:97851072..97855306,4	MCF-7	breast:
12	chr9:97765811..97769847-chr9:97852030..97854731,4	MCF-7	breast:
13	chr9:97439883..97441611-chr9:97852629..97855503,2	MCF-7	breast:
14	chr9:97761551..97763350-chr9:97853608..97856133,2	MCF-7	breast:
15	chr9:97678102..97679787-chr9:97854510..97856439,2	MCF-7	breast:
16	chr9:97676581..97686973-chr9:97850461..97860722,21	MCF-7	breast:
17	chr9:97581227..97584378-chr9:97852689..97856383,4	MCF-7	breast:
18	chr9:97791289..97793582-chr9:97853696..97856435,2	MCF-7	breast:
19	chr9:97844149..97846722-chr9:97853802..97855942,2	K562	blood:
20	chr9:97487901..97490479-chr9:97854147..97856269,2	MCF-7	breast:
21	chr9:97808882..97811165-chr9:97851910..97854865,2	MCF-7	breast:
22	chr9:97543978..97547772-chr9:97852128..97855870,5	MCF-7	breast:
23	chr9:97777349..97778997-chr9:97854120..97856635,2	MCF-7	breast:
24	chr9:97834760..97837018-chr9:97852814..97855297,3	MCF-7	breast:
25	chr9:97389746..97395320-chr9:97854192..97858136,7	MCF-7	breast:
26	chr9:97763635..97773461-chr9:97847821..97861280,36	MCF-7	breast:
27	chr9:97423710..97426238-chr9:97853833..97855724,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000158169	Chromatin interaction
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs4647559	0.95[AFR][1000 genomes]
rs55708950	0.81[AFR][1000 genomes]
rs55838201	0.80[AFR][1000 genomes]
rs57232080	0.86[AFR][1000 genomes]
rs58038897	0.86[AFR][1000 genomes]
rs59149855	0.80[AFR][1000 genomes]
rs60070508	0.86[AFR][1000 genomes]
rs7032542	0.86[AFR][1000 genomes]
rs7032704	0.86[AFR][1000 genomes]
rs73654506	0.86[AFR][1000 genomes]
rs73654507	0.86[AFR][1000 genomes]
rs73654508	0.86[AFR][1000 genomes]
rs73654509	0.86[AFR][1000 genomes]
rs73654510	0.86[AFR][1000 genomes]
rs73654511	0.86[AFR][1000 genomes]
rs73654512	0.80[AFR][1000 genomes]
rs73654513	0.86[AFR][1000 genomes]
rs73654514	0.86[AFR][1000 genomes]
rs73654515	0.80[AFR][1000 genomes]
rs73654516	0.86[AFR][1000 genomes]
rs73654518	0.95[AFR][1000 genomes]
rs73654519	0.87[AFR][1000 genomes]
rs73654520	0.95[AFR][1000 genomes]
rs73654521	0.95[AFR][1000 genomes]
rs73654522	0.95[AFR][1000 genomes]
rs73654523	0.95[AFR][1000 genomes]
rs73654525	0.95[AFR][1000 genomes]
rs73654526	0.95[AFR][1000 genomes]
rs73654528	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
2	nsv1038106	chr9:97793038-97881416	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
3	nsv1038523	chr9:97797032-97923774	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
4	nsv540175	chr9:97797032-97923774	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
5	nsv831656	chr9:97831551-97989980	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97813000-97873000	Weak transcription	K562	blood
2	chr9:97820600-97875000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr9:97838000-97871200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr9:97841200-97864400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:97841600-97855000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr9:97844000-97854800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr9:97844000-97898400	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr9:97846000-97861600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr9:97846200-97880000	Weak transcription	Primary B cells from cord blood	blood
10	chr9:97847600-97878400	Weak transcription	Dnd41	blood
11	chr9:97848800-97856800	Weak transcription	HUVEC	blood vessel
12	chr9:97849000-97856400	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr9:97849000-97858400	Enhancers	Brain Cingulate Gyrus	brain
14	chr9:97849200-97859200	Weak transcription	Fetal Brain Female	brain
15	chr9:97849200-97863800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr9:97849800-97864600	Enhancers	Psoas Muscle	Psoas
17	chr9:97850000-97856200	Enhancers	NHDF-Ad	bronchial
18	chr9:97850000-97858200	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr9:97850000-97862000	Weak transcription	Hela-S3	cervix
20	chr9:97850200-97855200	Enhancers	Spleen	Spleen
21	chr9:97850200-97855600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr9:97850800-97857400	Enhancers	Fetal Thymus	thymus
23	chr9:97851000-97857600	Enhancers	Brain Angular Gyrus	brain
24	chr9:97851400-97855400	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr9:97851400-97855600	Genic enhancers	A549	lung
26	chr9:97851400-97856600	Enhancers	Fetal Heart	heart
27	chr9:97851600-97855400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr9:97851600-97856400	Genic enhancers	Fetal Intestine Small	intestine
29	chr9:97851800-97855600	Enhancers	Stomach Mucosa	stomach
30	chr9:97851800-97856600	Enhancers	NH-A	brain
31	chr9:97851800-97856800	Enhancers	Esophagus	oesophagus
32	chr9:97851800-97858000	Enhancers	Brain Substantia Nigra	brain
33	chr9:97851800-97858600	Enhancers	Brain Hippocampus Middle	brain
34	chr9:97852000-97858000	Enhancers	Brain Anterior Caudate	brain
35	chr9:97852000-97858200	Enhancers	Right Atrium	heart
36	chr9:97852200-97854800	Enhancers	Ovary	ovary
37	chr9:97852200-97855600	Enhancers	Pancreas	Pancrea
38	chr9:97852200-97855800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
39	chr9:97852200-97856000	Genic enhancers	Fetal Stomach	stomach
40	chr9:97852200-97857600	Enhancers	Adipose Nuclei	Adipose
41	chr9:97852400-97854800	Enhancers	Rectal Mucosa Donor 29	rectum
42	chr9:97852400-97854800	Enhancers	Rectal Smooth Muscle	rectum
43	chr9:97852400-97855200	Enhancers	Lung	lung
44	chr9:97852400-97855600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr9:97852400-97855600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr9:97852400-97855600	Enhancers	Duodenum Mucosa	Duodenum
47	chr9:97852400-97856200	Enhancers	Rectal Mucosa Donor 31	rectum
48	chr9:97852400-97856600	Enhancers	Sigmoid Colon	Sigmoid Colon
49	chr9:97852600-97855400	Enhancers	Fetal Lung	lung
50	chr9:97852600-97855600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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