Variant report

Variant	rs73654648
Chromosome Location	chr9:99850916-99850917
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7861723	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428540	chr9:99722815-99863455	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831662	chr9:99752521-99939231	Bivalent Enhancer Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99849200-99851600	Enhancers	HSMM	muscle
2	chr9:99849200-99852200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr9:99849400-99851600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:99849400-99852200	Enhancers	HMEC	breast
5	chr9:99849600-99851000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr9:99849600-99851400	Enhancers	NHEK	skin
7	chr9:99849600-99851800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr9:99850000-99851600	Enhancers	Fetal Heart	heart
9	chr9:99850000-99851800	Enhancers	HSMMtube	muscle
10	chr9:99850200-99860600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:99850600-99851000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr9:99850600-99851600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr9:99850600-99855800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr9:99850600-99859000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr9:99850600-99877000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr9:99850800-99851200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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