Variant report

Variant	rs7861723
Chromosome Location	chr9:99823452-99823453
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs4633156	1.00[AMR][1000 genomes]
rs55747556	1.00[AMR][1000 genomes]
rs55784373	1.00[AMR][1000 genomes]
rs57305082	1.00[AMR][1000 genomes]
rs59536270	1.00[AMR][1000 genomes]
rs61660459	1.00[AMR][1000 genomes]
rs7044791	1.00[AMR][1000 genomes]
rs73654648	0.83[AFR][1000 genomes]
rs73654651	1.00[AMR][1000 genomes]
rs73654657	1.00[AMR][1000 genomes]
rs73654658	1.00[AMR][1000 genomes]
rs73654659	1.00[AMR][1000 genomes]
rs7863052	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053215	chr9:99483926-99824810	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv428540	chr9:99722815-99863455	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv831662	chr9:99752521-99939231	Bivalent Enhancer Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99815200-99824400	Weak transcription	Fetal Intestine Small	intestine
2	chr9:99816200-99834600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:99822000-99823800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr9:99822200-99824000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr9:99822400-99823600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr9:99822400-99824400	Weak transcription	Fetal Intestine Large	intestine
7	chr9:99822400-99824600	Weak transcription	NHEK	skin
8	chr9:99822800-99824400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr9:99823200-99823600	Weak transcription	HMEC	breast
10	chr9:99823200-99824000	Enhancers	Esophagus	oesophagus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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