Variant report

Variant	rs4633156
Chromosome Location	chr9:99880384-99880385
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs55784373	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57305082	1.00[AMR][1000 genomes]
rs59536270	1.00[AMR][1000 genomes]
rs61660459	1.00[AMR][1000 genomes]
rs7044791	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73654651	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73654657	1.00[AMR][1000 genomes]
rs73654658	1.00[AMR][1000 genomes]
rs73654659	1.00[AMR][1000 genomes]
rs7861723	1.00[AMR][1000 genomes]
rs7863052	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831662	chr9:99752521-99939231	Bivalent Enhancer Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv972432	chr9:99874607-99958095	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99867800-99887600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:99872000-99890200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr9:99875800-99895800	Strong transcription	HUES48 Cell Line	embryonic stem cell
4	chr9:99876400-99880600	Strong transcription	HUES64 Cell Line	embryonic stem cell
5	chr9:99876400-99885600	Strong transcription	HUES6 Cell Line	embryonic stem cell
6	chr9:99876800-99888200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr9:99879800-99880600	Strong transcription	H1 Cell Line	embryonic stem cell
8	chr9:99879800-99880800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
9	chr9:99879800-99880800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr9:99880000-99880600	Strong transcription	H9 Cell Line	embryonic stem cell
11	chr9:99880000-99881000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
12	chr9:99880200-99880400	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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