Variant report

Variant	rs61660459
Chromosome Location	chr9:99864360-99864361
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs4633156	1.00[AMR][1000 genomes]
rs55784373	1.00[AMR][1000 genomes]
rs57305082	1.00[AMR][1000 genomes]
rs59536270	1.00[AMR][1000 genomes]
rs7044791	1.00[AMR][1000 genomes]
rs73654651	1.00[AMR][1000 genomes]
rs73654657	1.00[AMR][1000 genomes]
rs73654658	1.00[AMR][1000 genomes]
rs73654659	1.00[AMR][1000 genomes]
rs7861723	1.00[AMR][1000 genomes]
rs7863052	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831662	chr9:99752521-99939231	Bivalent Enhancer Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3385534	chr9:99862931-99865329	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99850600-99877000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:99856600-99871400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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