Variant report

Variant	rs55747556
Chromosome Location	chr9:99582635-99582636
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:99524920..99527635-chr9:99581689..99584661,3	K562	blood:
2	chr9:99573486..99575260-chr9:99580338..99582751,2	K562	blood:

Variant related genes	Relation type
ENSG00000081386	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs61468009	1.00[AMR][1000 genomes]
rs7031156	1.00[AMR][1000 genomes]
rs7861723	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053215	chr9:99483926-99824810	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831660	chr9:99485058-99672080	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv520001	chr9:99533434-99795125	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv6624	chr9:99548787-99593968	ZNF genes & repeats Weak transcription Strong transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv1824059	chr9:99557743-99589296	Strong transcription Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv1816205	chr9:99567384-99583394	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99565400-99586200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr9:99565600-99586400	ZNF genes & repeats	Liver	Liver
3	chr9:99572600-99586200	ZNF genes & repeats	Brain Hippocampus Middle	brain
4	chr9:99572800-99586200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:99574400-99586400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr9:99576200-99586200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
7	chr9:99576200-99586200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
8	chr9:99576600-99586200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr9:99576600-99586200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
10	chr9:99577000-99586200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
11	chr9:99577000-99586200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr9:99577200-99586200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:99577400-99586400	ZNF genes & repeats	Fetal Brain Female	brain
14	chr9:99577800-99586200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr9:99578000-99585600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
16	chr9:99578000-99585600	ZNF genes & repeats	Fetal Lung	lung
17	chr9:99578000-99586200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr9:99578000-99586200	ZNF genes & repeats	Adipose Nuclei	Adipose
19	chr9:99578000-99586200	ZNF genes & repeats	Brain Cingulate Gyrus	brain
20	chr9:99578200-99586200	ZNF genes & repeats	Primary B cells from cord blood	blood
21	chr9:99578200-99586200	ZNF genes & repeats	Brain Substantia Nigra	brain
22	chr9:99578200-99586200	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
23	chr9:99578200-99586200	ZNF genes & repeats	Dnd41	blood
24	chr9:99578400-99584000	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
25	chr9:99578400-99586200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
26	chr9:99578400-99586200	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr9:99578400-99586200	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr9:99578600-99586200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
29	chr9:99578800-99586200	ZNF genes & repeats	Primary T cells from cord blood	blood
30	chr9:99578800-99586200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr9:99579000-99584600	ZNF genes & repeats	Brain Anterior Caudate	brain
32	chr9:99579000-99584600	ZNF genes & repeats	Psoas Muscle	Psoas
33	chr9:99579000-99584800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
34	chr9:99579000-99585800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
35	chr9:99579000-99585800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
36	chr9:99579000-99586200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr9:99579000-99586200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
38	chr9:99579000-99586200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
39	chr9:99579000-99586200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
40	chr9:99579000-99586200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
41	chr9:99579200-99583600	ZNF genes & repeats	Colon Smooth Muscle	Colon
42	chr9:99579200-99583600	ZNF genes & repeats	Fetal Muscle Leg	muscle
43	chr9:99579200-99586200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
44	chr9:99579200-99586200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
45	chr9:99579600-99584600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
46	chr9:99579800-99586200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
47	chr9:99579800-99586200	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
48	chr9:99580000-99586200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr9:99580000-99586200	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
50	chr9:99580200-99583800	ZNF genes & repeats	Fetal Brain Male	brain

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