Variant report

Variant	rs7031156
Chromosome Location	chr9:99370940-99370941
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:99370414..99371948-chr9:99380043..99382070,2	K562	blood:
2	chr9:99181272..99183084-chr9:99370340..99372612,2	K562	blood:
3	chr9:99367169..99368896-chr9:99369550..99372352,2	K562	blood:
4	chr9:99370448..99373645-chr9:99379863..99381694,3	K562	blood:
5	chr9:99370027..99371721-chr9:99373187..99375123,2	MCF-7	breast:
6	chr9:99370784..99377658-chr9:99379044..99383456,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000081377	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs55747556	1.00[AMR][1000 genomes]
rs61468009	1.00[AMR][1000 genomes]
rs73654888	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532433	chr9:98857250-99382944	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv893605	chr9:99324153-99533434	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv824999	chr9:99354698-99447369	Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99366400-99372200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr9:99366400-99373400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:99366400-99374200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr9:99366400-99374400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr9:99366600-99371400	Weak transcription	Brain Anterior Caudate	brain
6	chr9:99366600-99373600	Weak transcription	Osteobl	bone
7	chr9:99366600-99374200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr9:99367800-99372000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr9:99368000-99371800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:99368000-99371800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr9:99368000-99373000	Weak transcription	Liver	Liver
12	chr9:99368000-99373400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr9:99368000-99374400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:99368200-99373200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr9:99368200-99374400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr9:99368200-99374400	Weak transcription	Left Ventricle	heart
17	chr9:99369400-99371000	Enhancers	NHDF-Ad	bronchial
18	chr9:99370000-99371000	Enhancers	Brain Substantia Nigra	brain
19	chr9:99370000-99374200	Enhancers	Brain Hippocampus Middle	brain
20	chr9:99370200-99371200	Enhancers	Fetal Heart	heart
21	chr9:99370200-99371600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr9:99370600-99371800	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr9:99370600-99372800	Weak transcription	Brain Germinal Matrix	brain
24	chr9:99370600-99373600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr9:99370800-99371200	Weak transcription	Brain Angular Gyrus	brain
26	chr9:99370800-99371200	Weak transcription	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links