Variant report

Variant	rs73654888
Chromosome Location	chr9:99152687-99152688
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:99151644..99154115-chr9:99154735..99157180,3	K562	blood:
2	chr9:99150951..99154887-chr9:99177896..99180259,3	K562	blood:
3	chr9:99151762..99153284-chr9:99179856..99181931,2	MCF-7	breast:
4	chr9:99151644..99153254-chr9:99154735..99156975,2	K562	blood:
5	chr9:99146631..99148768-chr9:99151949..99154741,3	K562	blood:
6	chr9:99146631..99148191-chr9:99152221..99154359,2	K562	blood:
7	chr9:99151620..99153878-chr9:99178735..99180244,2	K562	blood:

Variant related genes	Relation type
ENSG00000165244	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs34025041	1.00[AMR][1000 genomes]
rs58043919	1.00[AMR][1000 genomes]
rs58629280	1.00[AMR][1000 genomes]
rs59314126	1.00[AMR][1000 genomes]
rs61468009	1.00[AMR][1000 genomes]
rs7031156	1.00[AMR][1000 genomes]
rs73543211	1.00[AMR][1000 genomes]
rs73543221	1.00[AMR][1000 genomes]
rs73543240	1.00[AMR][1000 genomes]
rs73543243	1.00[AMR][1000 genomes]
rs73543246	1.00[AMR][1000 genomes]
rs73543281	1.00[AMR][1000 genomes]
rs73654886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7859733	1.00[AMR][1000 genomes]
rs7868919	1.00[AMR][1000 genomes]
rs7869083	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532433	chr9:98857250-99382944	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv893602	chr9:99079114-99171631	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv893603	chr9:99085363-99262296	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv1035172	chr9:99134391-99234007	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv1053721	chr9:99143925-99213835	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99146200-99153600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:99146200-99156800	Weak transcription	Esophagus	oesophagus
3	chr9:99146400-99152800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:99146400-99153000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:99146400-99153400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr9:99146400-99153600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr9:99146400-99153800	Weak transcription	Fetal Brain Female	brain
8	chr9:99146400-99154600	Weak transcription	Gastric	stomach
9	chr9:99146400-99156800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr9:99146400-99157000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr9:99146400-99160400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr9:99146400-99160600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr9:99146400-99160800	Weak transcription	Primary B cells from peripheral blood	blood
14	chr9:99146400-99162800	Weak transcription	Brain Germinal Matrix	brain
15	chr9:99146600-99153400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr9:99146600-99153600	Weak transcription	Primary hematopoietic stem cells	blood
17	chr9:99146600-99154000	Weak transcription	Fetal Brain Male	brain
18	chr9:99146600-99155600	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr9:99146600-99156200	Weak transcription	Spleen	Spleen
20	chr9:99146600-99157000	Weak transcription	NH-A	brain
21	chr9:99146600-99157600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr9:99146600-99157600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr9:99146600-99160800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr9:99146600-99161000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr9:99146800-99152800	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr9:99146800-99153200	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr9:99146800-99153400	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr9:99146800-99153600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr9:99146800-99153600	Weak transcription	Left Ventricle	heart
30	chr9:99146800-99153600	Weak transcription	Small Intestine	intestine
31	chr9:99146800-99153600	Weak transcription	Osteobl	bone
32	chr9:99146800-99153800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr9:99146800-99153800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr9:99146800-99153800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr9:99146800-99154200	Weak transcription	HMEC	breast
36	chr9:99146800-99154200	Weak transcription	HSMM	muscle
37	chr9:99146800-99155400	Weak transcription	Placenta	Placenta
38	chr9:99146800-99157000	Weak transcription	Brain Hippocampus Middle	brain
39	chr9:99146800-99166600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr9:99147200-99155600	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr9:99147200-99162200	Strong transcription	Dnd41	blood
42	chr9:99147400-99155400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
43	chr9:99147600-99161000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr9:99147600-99161000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr9:99147800-99157200	Strong transcription	HUES6 Cell Line	embryonic stem cell
46	chr9:99148200-99161400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr9:99148400-99156600	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr9:99148800-99155800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr9:99148800-99156600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
50	chr9:99149000-99158600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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