Variant report

Variant	rs73654795
Chromosome Location	chr9:96707950-96707951
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96705528..96708010-chr9:96711810..96713358,2	K562	blood:
2	chr9:96702755..96704625-chr9:96706063..96708552,2	K562	blood:
3	chr9:96706258..96707958-chr9:96711820..96714339,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs60296005	1.00[AMR][1000 genomes]
rs7036040	1.00[AMR][1000 genomes]
rs73653406	1.00[AMR][1000 genomes]
rs73654365	1.00[AMR][1000 genomes]
rs73654369	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1035418	chr9:96647940-96711409	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Strong transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv824993	chr9:96699362-96725105	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv893590	chr9:96701287-96729129	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96704800-96708000	Bivalent Enhancer	Fetal Stomach	stomach
2	chr9:96706800-96708600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr9:96707000-96708000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
4	chr9:96707200-96708000	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:96707200-96708600	Flanking Active TSS	Stomach Smooth Muscle	stomach
6	chr9:96707400-96708600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
7	chr9:96707400-96708800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr9:96707600-96708000	Bivalent/Poised TSS	Primary monocytes fromperipheralblood	blood
9	chr9:96707600-96708000	Bivalent/Poised TSS	Primary neutrophils fromperipheralblood	blood
10	chr9:96707600-96708000	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
11	chr9:96707600-96708000	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
12	chr9:96707600-96708000	Bivalent/Poised TSS	Monocytes-CD14+_RO01746	blood
13	chr9:96707600-96708200	Bivalent/Poised TSS	Primary hematopoietic stem cells	blood
14	chr9:96707600-96708400	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
15	chr9:96707600-96708600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
16	chr9:96707600-96708600	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
17	chr9:96707600-96708600	Bivalent Enhancer	Fetal Intestine Small	intestine
18	chr9:96707600-96708600	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
19	chr9:96707600-96708800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
20	chr9:96707600-96708800	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr9:96707800-96708000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
22	chr9:96707800-96708000	Bivalent/Poised TSS	Primary B cells from cord blood	blood
23	chr9:96707800-96708000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
24	chr9:96707800-96708000	Flanking Bivalent TSS/Enh	Primary T helper 17 cells PMA-I stimulated	--
25	chr9:96707800-96708000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr9:96707800-96708000	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood
27	chr9:96707800-96708000	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
28	chr9:96707800-96708000	Bivalent Enhancer	Esophagus	oesophagus
29	chr9:96707800-96708000	Bivalent Enhancer	Fetal Brain Female	brain
30	chr9:96707800-96708000	Enhancers	Pancreas	Pancrea
31	chr9:96707800-96708000	Flanking Bivalent TSS/Enh	Stomach Mucosa	stomach
32	chr9:96707800-96708000	Bivalent Enhancer	Spleen	Spleen
33	chr9:96707800-96708000	Bivalent Enhancer	K562	blood
34	chr9:96707800-96708200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
35	chr9:96707800-96708200	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr9:96707800-96708200	Bivalent Enhancer	Fetal Intestine Large	intestine
37	chr9:96707800-96708200	Bivalent Enhancer	Fetal Muscle Leg	muscle
38	chr9:96707800-96708200	Flanking Active TSS	Right Ventricle	heart
39	chr9:96707800-96708400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
40	chr9:96707800-96708400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr9:96707800-96708400	Bivalent Enhancer	Fetal Brain Male	brain
42	chr9:96707800-96708400	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
43	chr9:96707800-96708400	Bivalent Enhancer	Fetal Lung	lung
44	chr9:96707800-96708400	Flanking Bivalent TSS/Enh	Placenta	Placenta
45	chr9:96707800-96708400	Active TSS	Gastric	stomach
46	chr9:96707800-96708400	Bivalent/Poised TSS	Osteobl	bone
47	chr9:96707800-96708600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
48	chr9:96707800-96708600	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
49	chr9:96707800-96708600	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
50	chr9:96707800-96708600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood

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