Variant report
| Variant | rs60296005 |
|---|---|
| Chromosome Location | chr9:96695800-96695801 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:96694511..96696175-chr9:96697020..96699663,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs3909255 | 1.00[EUR][1000 genomes] |
| rs57293846 | 1.00[EUR][1000 genomes] |
| rs57474922 | 1.00[EUR][1000 genomes] |
| rs57992049 | 1.00[EUR][1000 genomes] |
| rs58184281 | 1.00[EUR][1000 genomes] |
| rs60574743 | 1.00[EUR][1000 genomes] |
| rs60859572 | 1.00[EUR][1000 genomes] |
| rs61209800 | 1.00[EUR][1000 genomes] |
| rs7028775 | 1.00[EUR][1000 genomes] |
| rs7036040 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7042611 | 1.00[EUR][1000 genomes] |
| rs73516288 | 1.00[EUR][1000 genomes] |
| rs73517134 | 1.00[EUR][1000 genomes] |
| rs73517146 | 1.00[EUR][1000 genomes] |
| rs73517153 | 1.00[EUR][1000 genomes] |
| rs73518256 | 1.00[EUR][1000 genomes] |
| rs73518290 | 1.00[EUR][1000 genomes] |
| rs73653403 | 1.00[EUR][1000 genomes] |
| rs73653404 | 1.00[EUR][1000 genomes] |
| rs73653406 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73653435 | 1.00[EUR][1000 genomes] |
| rs73653436 | 1.00[EUR][1000 genomes] |
| rs73654349 | 1.00[EUR][1000 genomes] |
| rs73654365 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73654369 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73654372 | 1.00[EUR][1000 genomes] |
| rs73654793 | 1.00[EUR][1000 genomes] |
| rs73654794 | 1.00[EUR][1000 genomes] |
| rs73654795 | 1.00[AMR][1000 genomes] |
| rs73654796 | 1.00[EUR][1000 genomes] |
| rs7853152 | 1.00[EUR][1000 genomes] |
| rs7874412 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv893589 | chr9:96624645-96884544 | Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv1035418 | chr9:96647940-96711409 | Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Strong transcription | Chromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:96692800-96696200 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 2 | chr9:96695400-96696200 | Strong transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 3 | chr9:96695800-96696000 | Bivalent Enhancer | Fetal Muscle Trunk | muscle |
