Variant report

Variant	rs58184281
Chromosome Location	chr9:96833575-96833576
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96832845..96834835-chr9:96844919..96847301,2	K562	blood:
2	chr9:96831421..96834835-chr9:96844919..96848368,4	K562	blood:
3	chr9:96832650..96834562-chr9:96839054..96841006,2	K562	blood:
4	chr9:96832791..96835506-chr9:96842343..96844213,2	K562	blood:
5	chr9:96832419..96834906-chr9:96937688..96939318,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000158079	Chromatin interaction
ENSG00000269929	Chromatin interaction
ENSG00000199072	Chromatin interaction
ENSG00000199165	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs3909255	1.00[EUR][1000 genomes]
rs57293846	1.00[EUR][1000 genomes]
rs57474922	1.00[EUR][1000 genomes]
rs57992049	1.00[EUR][1000 genomes]
rs60296005	1.00[EUR][1000 genomes]
rs60574743	1.00[EUR][1000 genomes]
rs60859572	1.00[EUR][1000 genomes]
rs61209800	1.00[EUR][1000 genomes]
rs7028775	1.00[EUR][1000 genomes]
rs7036040	1.00[EUR][1000 genomes]
rs7042611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73516288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73517134	1.00[EUR][1000 genomes]
rs73517146	1.00[EUR][1000 genomes]
rs73517153	1.00[EUR][1000 genomes]
rs73518256	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73518290	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73653403	1.00[EUR][1000 genomes]
rs73653404	1.00[EUR][1000 genomes]
rs73653406	1.00[EUR][1000 genomes]
rs73653435	1.00[EUR][1000 genomes]
rs73653436	1.00[EUR][1000 genomes]
rs73654349	1.00[EUR][1000 genomes]
rs73654365	1.00[EUR][1000 genomes]
rs73654369	1.00[EUR][1000 genomes]
rs73654372	1.00[EUR][1000 genomes]
rs73654793	1.00[EUR][1000 genomes]
rs73654794	1.00[EUR][1000 genomes]
rs73654796	1.00[EUR][1000 genomes]
rs7853152	1.00[EUR][1000 genomes]
rs7861109	0.89[AFR][1000 genomes]
rs7874412	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv482457	chr9:96813852-96996170	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	217 gene(s)	inside rSNPs	diseases
3	nsv1043704	chr9:96816552-96873018	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96820600-96836400	Weak transcription	Pancreas	Pancrea
2	chr9:96822400-96859800	Weak transcription	Psoas Muscle	Psoas
3	chr9:96824000-96845000	Weak transcription	Right Ventricle	heart
4	chr9:96824200-96836600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr9:96824200-96860000	Weak transcription	Aorta	Aorta
6	chr9:96824200-96869600	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr9:96824400-96846600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:96824400-96850000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr9:96824600-96836400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr9:96824600-96839400	Weak transcription	Left Ventricle	heart
11	chr9:96824600-96844400	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr9:96824600-96845400	Weak transcription	Brain Germinal Matrix	brain
13	chr9:96824800-96836400	Weak transcription	Fetal Intestine Small	intestine
14	chr9:96825000-96836400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr9:96825200-96836600	Weak transcription	Lung	lung
16	chr9:96825200-96839800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr9:96827800-96836600	Weak transcription	Ovary	ovary
18	chr9:96828200-96836600	Weak transcription	Brain Angular Gyrus	brain
19	chr9:96828200-96836600	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr9:96828200-96847600	Weak transcription	HMEC	breast
21	chr9:96828200-96848400	Weak transcription	Fetal Intestine Large	intestine
22	chr9:96828200-96848600	Weak transcription	Colon Smooth Muscle	Colon
23	chr9:96828200-96859600	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr9:96828200-96860800	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr9:96828200-96862000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr9:96828200-96868200	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr9:96828400-96833800	Weak transcription	K562	blood
28	chr9:96828400-96835800	Weak transcription	HUVEC	blood vessel
29	chr9:96828400-96836000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr9:96828400-96836000	Weak transcription	Rectal Smooth Muscle	rectum
31	chr9:96828400-96836400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr9:96828400-96836400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr9:96828400-96839400	Weak transcription	Primary B cells from peripheral blood	blood
34	chr9:96828400-96843800	Weak transcription	Brain Anterior Caudate	brain
35	chr9:96828400-96844000	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr9:96828400-96844400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr9:96828400-96846800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr9:96828400-96846800	Weak transcription	Spleen	Spleen
39	chr9:96828400-96847400	Weak transcription	Osteobl	bone
40	chr9:96828400-96847600	Weak transcription	NHEK	skin
41	chr9:96828400-96848400	Weak transcription	NHDF-Ad	bronchial
42	chr9:96828400-96848600	Weak transcription	A549	lung
43	chr9:96828600-96836400	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr9:96829200-96834800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr9:96829400-96836600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr9:96829600-96872400	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr9:96829800-96845400	Weak transcription	Fetal Brain Female	brain
48	chr9:96831600-96836400	Weak transcription	Dnd41	blood
49	chr9:96832000-96836400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr9:96832000-96859800	Weak transcription	Rectal Mucosa Donor 29	rectum

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