Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96673253..96675820-chr9:96696121..96697775,2	MCF-7	breast:
2	chr9:96695813..96697665-chr9:96697797..96700316,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs3909255	1.00[EUR][1000 genomes]
rs57293846	1.00[EUR][1000 genomes]
rs57474922	1.00[EUR][1000 genomes]
rs57992049	1.00[EUR][1000 genomes]
rs58184281	1.00[EUR][1000 genomes]
rs60296005	1.00[EUR][1000 genomes]
rs60574743	1.00[EUR][1000 genomes]
rs60859572	1.00[EUR][1000 genomes]
rs61209800	1.00[EUR][1000 genomes]
rs7028775	1.00[EUR][1000 genomes]
rs7036040	1.00[EUR][1000 genomes]
rs7042611	1.00[EUR][1000 genomes]
rs73516288	1.00[EUR][1000 genomes]
rs73517134	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73517146	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73518256	1.00[EUR][1000 genomes]
rs73518290	1.00[EUR][1000 genomes]
rs73653403	1.00[EUR][1000 genomes]
rs73653404	1.00[EUR][1000 genomes]
rs73653406	1.00[EUR][1000 genomes]
rs73653435	1.00[EUR][1000 genomes]
rs73653436	1.00[EUR][1000 genomes]
rs73654349	1.00[EUR][1000 genomes]
rs73654365	1.00[EUR][1000 genomes]
rs73654369	1.00[EUR][1000 genomes]
rs73654372	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73654793	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73654794	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73654796	1.00[EUR][1000 genomes]
rs7853152	1.00[EUR][1000 genomes]
rs7874412	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1035418	chr9:96647940-96711409	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Strong transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96696200-96697000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:96696400-96699000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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