Variant report

Variant	rs73653436
Chromosome Location	chr9:96870236-96870237
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96860355..96862707-chr9:96868776..96872890,3	K562	blood:
2	chr9:96864692..96867836-chr9:96868310..96870488,3	K562	blood:
3	chr9:96861323..96864485-chr9:96867388..96870622,3	K562	blood:

Variant related genes	Relation type
ENSG00000158079	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs3909255	1.00[EUR][1000 genomes]
rs57293846	1.00[EUR][1000 genomes]
rs57474922	1.00[EUR][1000 genomes]
rs57992049	1.00[EUR][1000 genomes]
rs58184281	1.00[EUR][1000 genomes]
rs60296005	1.00[EUR][1000 genomes]
rs60574743	1.00[EUR][1000 genomes]
rs60859572	1.00[EUR][1000 genomes]
rs61209800	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7028775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7036040	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7042611	1.00[EUR][1000 genomes]
rs73516288	1.00[EUR][1000 genomes]
rs73517134	1.00[EUR][1000 genomes]
rs73517146	1.00[EUR][1000 genomes]
rs73517153	1.00[EUR][1000 genomes]
rs73518256	1.00[EUR][1000 genomes]
rs73518290	1.00[EUR][1000 genomes]
rs73653403	1.00[EUR][1000 genomes]
rs73653404	1.00[EUR][1000 genomes]
rs73653406	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73653435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73654349	1.00[EUR][1000 genomes]
rs73654365	1.00[EUR][1000 genomes]
rs73654369	1.00[EUR][1000 genomes]
rs73654372	1.00[EUR][1000 genomes]
rs73654793	1.00[EUR][1000 genomes]
rs73654794	1.00[EUR][1000 genomes]
rs73654796	1.00[EUR][1000 genomes]
rs7853152	1.00[EUR][1000 genomes]
rs7874412	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv482457	chr9:96813852-96996170	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	217 gene(s)	inside rSNPs	diseases
3	nsv1043704	chr9:96816552-96873018	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv831655	chr9:96834042-97042009	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	218 gene(s)	inside rSNPs	diseases
5	nsv893591	chr9:96849137-96883271	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
6	esv2761543	chr9:96857735-96875582	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96829600-96872400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr9:96845600-96885400	Weak transcription	Gastric	stomach
3	chr9:96846000-96870600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr9:96849400-96883800	Weak transcription	Brain Germinal Matrix	brain
5	chr9:96849600-96870400	Weak transcription	Fetal Lung	lung
6	chr9:96857200-96871000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr9:96857200-96882800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr9:96859200-96880800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr9:96860200-96876200	Weak transcription	Esophagus	oesophagus
10	chr9:96860400-96873400	Weak transcription	NHLF	lung
11	chr9:96860600-96870600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr9:96860600-96870800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr9:96860600-96871000	Weak transcription	Brain Angular Gyrus	brain
14	chr9:96860600-96871000	Weak transcription	Right Ventricle	heart
15	chr9:96860600-96872800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr9:96860800-96870600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr9:96860800-96870800	Weak transcription	HSMM	muscle
18	chr9:96860800-96870800	Weak transcription	NH-A	brain
19	chr9:96860800-96870800	Weak transcription	NHDF-Ad	bronchial
20	chr9:96860800-96870800	Weak transcription	NHEK	skin
21	chr9:96860800-96871000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr9:96860800-96871000	Weak transcription	HMEC	breast
23	chr9:96860800-96872800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr9:96860800-96872800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr9:96860800-96886800	Weak transcription	Aorta	Aorta
26	chr9:96861000-96884000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr9:96861200-96870600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr9:96861200-96870600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr9:96861200-96871000	Weak transcription	Lung	lung
30	chr9:96861400-96871000	Weak transcription	Left Ventricle	heart
31	chr9:96861400-96875200	Weak transcription	Pancreas	Pancrea
32	chr9:96861400-96884600	Weak transcription	Ovary	ovary
33	chr9:96861600-96870800	Weak transcription	Fetal Muscle Trunk	muscle
34	chr9:96862600-96870800	Weak transcription	Brain Substantia Nigra	brain
35	chr9:96862600-96870800	Weak transcription	Fetal Stomach	stomach
36	chr9:96862800-96871000	Weak transcription	Brain Cingulate Gyrus	brain
37	chr9:96863600-96870800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr9:96864000-96871000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr9:96864200-96877600	Weak transcription	Primary T cells from cord blood	blood
40	chr9:96865600-96870800	Weak transcription	Fetal Muscle Leg	muscle
41	chr9:96865600-96870800	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr9:96865800-96872800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr9:96866200-96872000	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr9:96867000-96870800	Weak transcription	Adipose Nuclei	Adipose
45	chr9:96867200-96870800	Weak transcription	Brain Hippocampus Middle	brain
46	chr9:96867400-96873000	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr9:96867600-96870800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr9:96867600-96889600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr9:96867800-96870400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr9:96867800-96870800	Weak transcription	Psoas Muscle	Psoas

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